Crop | eggplant |
---|---|
Population | AL2010 |
Linkage Group | E_11 |
Marker Type | SSR |
Map Position | 88.1 |
Annotation | |
Source Name | emg21G24 |
Source Type | genomic |
Source Sequence | GGTTCAATGTATAAAGCTCTGCTTTATGTTCAAATTTCTT CATCAACAGTTCAAGCTTTAATATGATGTGTTTTCAGTAT TTTCAAAGGAGTTGGATTGTTGTACTAATTTTTTTGTTAC TTGATTTACTTCATAGCCTCGTGTCATCTGGGATACCAGT GTTAAAGAGCAGATTGGATGAGATCCTCTCCCTTTCATTA ATTAGTTGTGGAATTAAGATAGCTGAATGGACGACTTAGT GGAACCACTGTCCTAACATGTTTCTTGGCTGAAGCTATTT GATAATAAGCATCCTATCTCATTTCAATTTGTAAACTAAT ATTCCTTACCCTCAGGCAGCTTTGCTTCCACATCATGCTT CTCTCTAAGGTTGCATCTGTTAGCCAGAAGATTTTTTCCT TGGCAAGAGATTCAGCATTATTTTAATAAATCCAGTGATG CAGGTAGAGCTGGTCATCCTTCCACGTTCAAGTATAATGG AAAATCCACCAGACCAGCAAAACCAGCCGCCACCTCCTCC CCCTCCTCCTCCCCAAAATCAAGATAATTCAGAAGAGCAG AATGACGAAGAAGAAAAAGAAGAAGATCAAGAGGTTTGTT GACAAAAAATGTTTTCCTCTTGGCTCTCTCTCTCTCTCTC TCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGTGTGTG TGTGTGTGGCTGGGTGAAGATTCATTACCTACTTGCACCT TTCTGCCCCAACCAACAAGATGCTGGGAGGGAACAGAAGG GGGATAACTGATTTCTTTGACCAGACTATTTAATTTGTTA ACAGGATGAGAAAGATGAGGAAAATGAGCAGCAACAGGAT CAAATACCTGATGAGTTCATTTTTGATGCCGAAGGTGGTT TAGTGGACGAAAA |
Developer | NIVTS |
Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
motif | (tc)21(tg)11 |
---|---|
PCR product (bp) | 291 |
fwd primer | emg21G24/U |
fwd primer seq. | gaaaatccaccagaccagcaaaac |
rev primer | emg21G24/L |
rev primer seq. | cagttatcccccttctgttccctc |
fluor. primer | emg21G24/U_PET |
dye | PET |
fluor. Primer seq. | PET-ataaatccaccagaccagcaaaac |
PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
polymerase | Roche Taq |
Line | allele-1 | allele-2 |
---|---|---|
AE-P03 | 298 | 298 |
EPL-1 | 298 | 298 |
LS1151 (S.linneanum) | 288 | 288 |
LS1934 | 298 | 298 |
LS4021 (S. incanum) | ||
Nakate Shinkuro | 298 | 298 |
Senryo 2 | 298 | 298 |
Shironasu | 298 | 298 |
WCGR112-8 | 323 | 323 |
White Egg | 284 | 284 |
Population | Linkage Group | Position |
---|---|---|
AL2010 | E_11 | 88.1 |
ALF2 | AL11 | 96.4 |
EW2009 | LG01 | 17.6 |
LW2010 | E_11 | 79.6 |
LWA2010 | LWA_11 | 79.465 |
LWAE2012 | E_11 | 74.294 |
LWF2_2022 | E_11 | 110.2 |
DB | Program | Definition | E-Value |
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EST Name | Species | Strain |
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