Crop | eggplant |
---|---|
Population | AL2010 |
Linkage Group | E_01 |
Marker Type | SSR |
Map Position | 94.0 |
Annotation | |
Source Name | emg21B11 |
Source Type | genomic |
Source Sequence | CCAGGCATCACAAAGCATTATCAGAATGAGACTGAAAATT CCCAGCTAGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT GTGTGTGTGTGTGTGTGTGTTTGGGGGGGGCTGAGATGGA GCAGAGGCTCACTCTGAAATCTCTTATTCAGTGGTGGAAA AAATTGATATTGTAGGTTTAGAGGAAACAATTAAAGCCTC TGGTACAAGGAGAGCATCATAACAATTTGGGAAAAAAGAT GGTGGACTTGCTCAGGGAGACAACATGGACTGTTTCCACC CTCTTGTTTAATTGAAAGCTTACAGGATGATTTTAGGTGG GTCTTCTTAGGGGTTTCAATTCTATGACACACAATCTGCT TCTAAAAGAGAGGAGTTGAGGAATGAGTTGGTTGCAGCGA AAGGGCTAAGGGTGATTAGTGGTGACTTCAACATTTCAGA TATAAAACTAAAAAACTGAATTGTAACTACAGATCAATAA AGGAATTCTCAGATTCAATTGAAGACCTTGGTCTTGTTGA ATTACCATTGCACAGGG |
Developer | NIVTS |
Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
motif | (tg)24 |
---|---|
PCR product (bp) | 141 |
fwd primer | emg21B11/U |
fwd primer seq. | ccaggcatcacaaagcattatcag |
rev primer | emg21B11/L |
rev primer seq. | gatttcagagtgagcctctgctcc |
fluor. primer | emg21B11/U_FAM |
dye | FAM |
fluor. Primer seq. | FAM-acaggcatcacaaagcattatcag |
PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
polymerase | Roche Taq |
Line | allele-1 | allele-2 |
---|---|---|
AE-P03 | 146 | 146 |
EPL-1 | 144 | 144 |
LS1151 (S.linneanum) | 135 | 135 |
LS1934 | 137 | 146 |
LS4021 (S. incanum) | 137 | 137 |
Nakate Shinkuro | 137 | 146 |
Senryo 2 | 144 | 144 |
Shironasu | 137 | 137 |
WCGR112-8 | 137 | 137 |
White Egg | 137 | 137 |
PI 286106 | 134 | 134 |
Population | Linkage Group | Position |
---|---|---|
AL2010 | E_01 | 94.0 |
ALF2 | AL01 | 86.6 |
EW2009 | LG03 | 59.3 |
LWA2010 | LWA_01 | 81.386 |
LWAE2012 | E_01 | 84.782 |
N28F2 | E_01 | 49.4 |
DB | Program | Definition | E-Value |
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EST Name | Species | Strain |
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