+Marker Data: emg11J01

Crop eggplant
Population AL2010
Linkage Group E_02
Marker Type SSR
Map Position 0.7
Annotation
Source Name emg11J01
Source Type genomic
Source Sequence CCCAATTTTTGCAAATTCGCCCAAACTCGCCCATTAAGTA TGGGCTAAAAGAATGATTTTAAATATGGGTAATATTTGGG TTGATACCCATATTTAACCCATTAAAATATGGGTATTTTT GGGTAAATTATGGGTAACCCGTTTAACCCATACCTATCTT TAAGAAGATCGGTTATACACACAAATAGCTCGTATTACAG ACTAATGTTATATAGTTCTGCAATGCTTGAAATCTTCTAC ATATACAGTATGGTCCATGCTTTAGATTTCATTTTTTACA TTATCAAAACTTTGTCCAACAGTCCAAAATAGGTACTTTG AAGCCTATTTTGGGGTTAATTCTTGATAACTTCTGACTTT ATTTTCACCTATGAAGTGTTTTTATTCTCAAGCGAAGAGA ATAGATACTTTATTATGCTTTATAGTTGAGTTGTAATTGT AATGGTTTATGTATAATTCTTTACACTTGACTTGGAGATA GAAGATCCATTTAAATGGGTCTAACTTGCATTTTACCCAA CCCATATTATATCTTACCCATATTAAAATGGGCGGGTTTG AATTACAACCCATTTTTTCTCAATTCACTTTTAACCCGTC CAAATTCAATCCAACCTGTCCATTTGCCTGCACTAGGTAG AACTAACCAAAAGAAAGAGGTTGACTTGAATTTTCATTCA TTATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT GTGTGTGTGTGTGTGTGTGTGTAATGAGAGAGATAGAGAC TTAATAATAATTTTTTTAAAAAAATTATTTTAGGATGCAA TTTCAAATTCTAATTGTGATGCTCAATTTTTATTTAATTT TCTTACATAAAGTTTTGGTTGGTTAAGCTTGTTTGTTTCT TACATATTTTCTCATTTTGGAGAACTATGTGGCTATTTTG CATGTTTGTAACTAGG
Developer NIVTS
Document Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153

motif (tg)28taatg(ag)3atagagact(taa)3
PCR product (bp) 298
fwd primer emg11J01/U
fwd primer seq. tgcctgcactaggtagaactaaccaaa
rev primer emg11J01/L
rev primer seq. tgcaaaatagccacatagttctcca
fluor. primer
dye
fluor. Primer seq.
PCR condition 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C
polymerase Roche Taq

Line allele-1 allele-2
AE-P03 306 306
EPL-1 303 303
LS1151 (S.linneanum) 305 305
LS1934 303 303
LS4021 (S. incanum)
Nakate Shinkuro 314 314
Senryo 2 301 301
Shironasu 303 303
WCGR112-8 303 303
White Egg 310 310

Population Linkage Group Position
AL2010 E_02 0.7
LWA2010 LWA_02 1.474
LWAE2012 E_02 2.127

DB Program Definition E-Value
TomatoBAC_end BLASTN SL_EcoRI0015C12_T7_274659 Chromat_file:SL_EcoRI_015_C12-T7 SGN_GSS_ID:291485 (vector and quality trimmed) 8e-31
TomatoBAC_end BLASTN SL_EcoRI0103A19_SP6_313752 Chromat_file:SL_EcoRI_103_A19-SP6 SGN_GSS_ID:330578 (vector and quality trimmed) 1e-20
TomatoBAC_end BLASTN SL_EcoRI0078C15_T7_346865 Chromat_file:SL_EcoRI_078_C15-T7 SGN_GSS_ID:363691 (vector and quality trimmed) 4e-20
TomatoBAC_end BLASTN SL_EcoRI0010K11_SP6_290927 Chromat_file:SL_EcoRI_010_K11-SP6 SGN_GSS_ID:307753 (vector and quality trimmed) 4e-17
TomatoBAC_end BLASTN SL_EcoRI0119J04_SP6_326442 Chromat_file:SL_EcoRI_119_J04-SP6 SGN_GSS_ID:343268 (vector and quality trimmed) 1e-11

EST Name Species Strain