Crop | eggplant |
---|---|
Population | AL2010 |
Linkage Group | E_08 |
Marker Type | SSR |
Map Position | 28.2 |
Annotation | |
Source Name | emg11F21 |
Source Type | genomic |
Source Sequence | CCTCAAAATCGATGGCTTAGGTCGAGGTTCCGTTGAAGAT TCTTCGGCATATTCCTTCAAGTGCTGAATGGATTTGATTT AGGAAATTTGAAATTCAATTGAATTTCCTTCAAATTTCCT ATTTTGACCCCATTTTCAACTCTATTTTTACCCCTTATAT AAACACCATCTTTGCTCTTCGGAAGGGGCTGCTTCACACA CACACACACACACACACACACACACACACACATATATATA TATATATGTATATTCTACTTCCATTCAAAGAAGAAAAGAA TGTTTGAATCCTTAGGGTTACAGTTCCTAGTAAAAATTTC CGAATTACTACTTTTCAGATAGTGGTGTTGACTTGTCATG ATTAAACCTTCATGTTAAGCTCATTGTCTCTGGTTCGTTG CTTTAGAAAAGGGCTATTTATGCATGTGGAGTCATGTTTT GATAGCTAAATGCCATACAGTTGGATCTATAAATGTAGTA TCCCAGGACTTCTTCATATATATCTTTTGTTTCAAGTAAA AATAGATGCTTATGTAATTTCATCTTCTTTTTGCACATGT GGCAATCGTTCGAGTCCCCTTGGAATGCCCTTTGCACACC ATCAAGCTATTTTCTCCTCAAGTCAGTCCATTGCTTCATA ATGGAAGCAACATACAGGTATCCAACAGTGATATATGATA CAAGTGGAAAATAGGATTGTATACACTAATATACAACGTA TATACAACATTGGTATACAAGGATAGAACTAGG |
Developer | NIVTS |
Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
motif | (ac)18a(ta)7 |
---|---|
PCR product (bp) | 256 |
fwd primer | emg11F21/U |
fwd primer seq. | taaacaccatctttgctcttcgga |
rev primer | emg11F21/L |
rev primer seq. | agcccttttctaaagcaacgaacc |
fluor. primer | |
dye | |
fluor. Primer seq. | |
PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
polymerase | Roche Taq |
Line | allele-1 | allele-2 |
---|---|---|
AE-P03 | 259 | 259 |
EPL-1 | 263 | 263 |
LS1151 (S.linneanum) | ||
LS1934 | 261 | 261 |
LS4021 (S. incanum) | 246 | 246 |
Nakate Shinkuro | 259 | 259 |
Senryo 2 | 261 | 261 |
Shironasu | 261 | 261 |
WCGR112-8 | 261 | 261 |
White Egg | 257 | 257 |
Population | Linkage Group | Position |
---|---|---|
AL2010 | E_08 | 28.2 |
LWA2010 | LWA_08 | 30.86 |
LWAE2012 | E_08 | 31.318 |
DB | Program | Definition | E-Value |
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EST Name | Species | Strain |
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