Crop | eggplant |
---|---|
Population | AL2010 |
Linkage Group | E_08 |
Marker Type | SSR |
Map Position | 10.7 |
Annotation | |
Source Name | emf21I02 |
Source Type | genomic |
Source Sequence | CTTAATTCTTCACCAACTCGAAATTTACATAATAAGAATT CAACCAAGCGCGGGTAAACGGCGGGAGTAACTATGACTCT CTTAAGGTAGCCAAATGCCTCGTCATCTAATTAGTGACGC GCATGAATGGATTAACGAGATTCCCACTGTCCCTGTCTAC TATCCAGCGAAACCACAGCCAAGGGAACGGGCTTGGCAGA ATCAGCGGGGAAAGAAGACCCTGTTGAGCTGGACTTTCTG CATTGATGGACAGACCTTCTATCTATAGAGGATTTTATCA CTCTCAGAGGTTGCATTTAGTCTCAAATGAATTTGATCTA GCTGAGGATGCTGTACGTTAAAAGTAATGTTTAATGTGGC TTTGAGGTTTATTATTTATCATGATGTATTCCACTCTCTT AACCTTTTCCTACCTTTTCATTAGACTACAATGTAGCACT GTTAATTTAACTAATTGAGTTGTTTTAGCATAAATGAGAA CTTATGAAGATACAAATCGTGCATTTCTCAAATCAAAAGG GAAGAGGAGACTTGCTACTAAACTTGAGTTGTTTAGTGTC AGGTTTTATGTTCTTATTTGAATTTGGGACAATTTTAGAT GCGTTTTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT CTCTCTCTCTAAGTGATTTTGACTGACTAAAATATAATGC AGGAGCCTGTGAAATTGATATTGGAACCTATGAAATTGAT GGAGTTAGTTATCTGCCGCTCATGTTTTCTTTTTGATTCT TTTTTTGGGTAGATTGAAG |
Developer | NIVTS |
Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
motif | (tc)20 |
---|---|
PCR product (bp) | 201 |
fwd primer | emf21I02/U |
fwd primer seq. | cgtgcatttctcaaatcaaaaggg |
rev primer | emf21I02/L |
rev primer seq. | tcaatttcacaggctcctgcatta |
fluor. primer | emf21I02/U_PET |
dye | PET |
fluor. Primer seq. | PET-agtgcatttctcaaatcaaaaggg |
PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
polymerase | Roche Taq |
Line | allele-1 | allele-2 |
---|---|---|
AE-P03 | 214 | 214 |
EPL-1 | 208 | 208 |
LS1151 (S.linneanum) | 216 | 216 |
LS1934 | 202 | 202 |
LS4021 (S. incanum) | 212 | 212 |
Nakate Shinkuro | 212 | 212 |
Senryo 2 | 210 | 214 |
Shironasu | 218 | 218 |
WCGR112-8 | 214 | 214 |
White Egg | 202 | 202 |
Population | Linkage Group | Position |
---|---|---|
AL2010 | E_08 | 10.7 |
EW2009 | LG07 | 12.7 |
LW2010 | E_08 | 13.6 |
LWA2010 | LWA_08 | 11.265 |
LWAE2012 | E_08 | 10.258 |
LWF2_2022 | E_08 | 12.5 |
NAF2 | NA08 | 20.0 |
DB | Program | Definition | E-Value |
---|---|---|---|
TomatoBAC_end | BLASTN | SL_MboI0135O15_T7_382385 Chromat_file:SL_MboI_135_O15-T7 SGN_GSS_ID:399579 (vector and quality trimmed) | 1e-106 |
TomatoBAC_end | BLASTN | SL_MboI0135O02_SP6_382358 Chromat_file:SL_MboI_135_O02-SP6 SGN_GSS_ID:399552 (vector and quality trimmed) | 1e-106 |
TomatoBAC_end | BLASTN | SL_MboI0135J19_SP6_382152 Chromat_file:SL_MboI_135_J19-SP6 SGN_GSS_ID:399346 (vector and quality trimmed) | 1e-106 |
TomatoBAC_end | BLASTN | SL_MboI0135E21_SP6_381916 Chromat_file:SL_MboI_135_E21-SP6 SGN_GSS_ID:399110 (vector and quality trimmed) | 1e-106 |
TomatoBAC_end | BLASTN | SL_MboI0134O21_T7_381629 Chromat_file:SL_MboI_134_O21-T7 SGN_GSS_ID:398823 (vector and quality trimmed) | 1e-106 |
EST Name | Species | Strain |
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