| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_08 |
| Marker Type | SSR |
| Map Position | 26.4 |
| Annotation | |
| Source Name | emf21A23 |
| Source Type | genomic |
| Source Sequence | CTATAGTTAGGATTTGGTTGCTATAGTTAGGGTTTTGTTG TTATTTCTCTCTCCTCTCTTCTTCTCTCTCTCTCTCTCTC TCTCTCTCTCTCTCTCTCTCTCTCTCTCTGCATTTTCTTA CTAGATATACAATTACATATGCATACCAGTTGCATATATA CAATTATTTTGATAGATATACATAGTCAATTCGATAGATA TACATATACAATTTGCCTCTCTCCACTTTTTGCCCTCTCT CGCCTCTCTGCTCCCTCTTTTGATCTCGCTCACCTCTCTC CTCCCTGTCTCAATCTCGTTTGCTAGATATACAAGTACAT ATGTATATTAGTTACACATATAGAATTATTTAACGGGAAA AGGCATAAATTACCCCTCGAAGTTGTCCTGAAAAGTCATT TACACACCTTAACTATCTAAGTGACCTATTACATACCTAT ACTTTTCAAAAGTGAAACTATTACACACCTTAAAACTGAC GTGGCAAAATTTAAAAAAATAAAAAAATAAAAAATAAAAG TAGGCGCATCAGAATCAGTTTTAAAGTAAAAAAGAAAAAT TAAAATACCCCTTATACCCCCTCCCCTACCCACATCTCAT GTTCTTCATACCCCACCATTGTCATCTTCTTCACATTAAC AAGAACAACCCAGAAATAAGTTACATAAAAAATATAATTT TTTTCTCTTAAATTTCTCAGCAAGAAGAATCAAAATAGTA TCAAGTGTAATTCTTAACCGAAG |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (tc)4(ct)3tct(tc)23 |
|---|---|
| PCR product (bp) | 273 |
| fwd primer | emf21A23/U |
| fwd primer seq. | ggatttggttgctatagttagggtt |
| rev primer | emf21A23/L |
| rev primer seq. | aggagagaggtgagcgagatcaaa |
| fluor. primer | emf21A23/U_VIC |
| dye | VIC |
| fluor. Primer seq. | VIC-agatttggttgctatagttagggtt |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 274 | 274 |
| EPL-1 | 279 | 279 |
| LS1151 (S.linneanum) | ||
| LS1934 | 288 | 288 |
| LS4021 (S. incanum) | ||
| Nakate Shinkuro | 276 | 276 |
| Senryo 2 | 270 | 278 |
| Shironasu | 278 | 278 |
| WCGR112-8 | 276 | 276 |
| White Egg | 282 | 282 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_08 | 26.4 |
| ALF2 | AL08 | 32.4 |
| EW2009 | LG07 | 34.0 |
| LW2010 | E_08 | 37.8 |
| LWA2010 | LWA_08 | 30.248 |
| LWAE2012 | E_08 | 31.424 |
| LWF2_2022 | E_08 | 37.5 |
| NAF2 | NA08 | 47.2 |
| DB | Program | Definition | E-Value |
|---|---|---|---|
| TomatoBAC_end | BLASTN | LE_HBa0179L14_SP6_125452 Chromat_file:LE_HBa_179_L14-SP6 SGN_GSS_ID:142801 (vector and quality trimmed) | 8e-12 |
| TomatoBAC_end | BLASTN | LE_HBa0195O05_T7_258413 Chromat_file:LE_HBa_195_O05-T7 SGN_GSS_ID:275239 (vector and quality trimmed) | 7e-09 |
| TomatoBAC_end | BLASTN | LE_HBa0222K19_T7_399405 Chromat_file:LE_HBa_222_K19-T7 SGN_GSS_ID:416599 (vector and quality trimmed) | 3e-08 |
| TomatoBAC_end | BLASTN | SL_EcoRI0119J16_T7_326467 Chromat_file:SL_EcoRI_119_J16-T7 SGN_GSS_ID:343293 (vector and quality trimmed) | 3e-08 |
| TomatoBAC_end | BLASTN | LE_HBa0034N15_SP6_7948 Chromat_file:LE_HBa_034_N15-SP6 SGN_GSS_ID:7948 (vector and quality trimmed) | 4e-07 |
| EST Name | Species | Strain |
|---|
