Crop | eggplant |
---|---|
Population | AL2010 |
Linkage Group | E_09 |
Marker Type | SSR |
Map Position | 111.4 |
Annotation | |
Source Name | emf11L21 |
Source Type | genomic |
Source Sequence | TAGGCCTTGCTAGCAGAAGCCTAGGTAACGTACCCCTCGT TATCCTCTTGTTTTGGTACTGGTTGGTTAGGTCATTTTGT ACAGATAAACTTAGCAATGACCTAGCAAGATAGAATGTTA TCTGCTCAATATGTACATTTAGTTTTATGTACCTTATGGC TATCATGGAATTGAAGGAAAATCGGATTTTCGAAAAGCCA ACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC TCTCTCTCTAGAATGAATGAATGAGCAATGAGTTGTATTC TAACTATGAAAAGCCCAGGAAATAGAGCCTATAGCCATAT GGCTACCAACTTCCTTAGATTTCATTCATGTTGGCTGATG TGAGTCCTTGAGAG |
Developer | NIVTS |
Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
motif | (tc)23 |
---|---|
PCR product (bp) | 294 |
fwd primer | emf11L21/U |
fwd primer seq. | gaagcctaggtaacgtacccctcg |
rev primer | emf11L21/L |
rev primer seq. | ggctctatttcctgggcttttcat |
fluor. primer | emf11L21/U_PET |
dye | PET |
fluor. Primer seq. | PET-atagcctaggtaacgtacccctcg |
PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
polymerase | Roche Taq |
Line | allele-1 | allele-2 |
---|---|---|
AE-P03 | 295 | 295 |
EPL-1 | 295 | 295 |
LS1151 (S.linneanum) | 295 | 295 |
LS1934 | 293 | 295 |
LS4021 (S. incanum) | 340 | 340 |
Nakate Shinkuro | 295 | 295 |
Senryo 2 | 291 | 295 |
Shironasu | 293 | 293 |
WCGR112-8 | 299 | 299 |
White Egg | 293 | 293 |
Population | Linkage Group | Position |
---|---|---|
AL2010 | E_09 | 111.4 |
EW2009 | LG06 | 6.0 |
LW2010 | E_09 | 104.1 |
LWA2010 | LWA_09 | 108.978 |
LWAE2012 | E_09 | 92.832 |
LWF2_2022 | E_09 | 121.6 |
DB | Program | Definition | E-Value |
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EST Name | Species | Strain |
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