| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_06 |
| Marker Type | SSR |
| Map Position | 60.7 |
| Annotation | |
| Source Name | emf11C06 |
| Source Type | genomic |
| Source Sequence | GAACAAACAAGAGTTTGCTCATGTCCAAAACAAAGAATTT TGCTAGCATCAAGCATCTCGTAGAACATATAAATCGGCAA TTATACATGGGCCTCTTCATATTCACAACAAAACGTAGAC ACGAATAACACAAGAGAGAGAGAGAGAGAGAGAGATATGG AAAGCGCCTATAACTGTATGGACAAACATAGCCTGGGATA CGTGAGTTTGGCTCTGCAGCCCCATCATTTTGTTGTTGGA GTTTTCGGGGTAGCATATTTCAGGCTTCTGCTAGCAAGCC TTAAACA |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (ag)11 |
|---|---|
| PCR product (bp) | 156 |
| fwd primer | emf11C06/U |
| fwd primer seq. | tgggcctcttcatattcacaacaa |
| rev primer | emf11C06/L |
| rev primer seq. | aactccaacaacaaaatgatgggg |
| fluor. primer | emf11C06/U_VIC |
| dye | VIC |
| fluor. Primer seq. | VIC-agggcctcttcatattcacaacaa |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 163 | 163 |
| EPL-1 | 163 | 163 |
| LS1151 (S.linneanum) | 178 | 178 |
| LS1934 | 157 | 157 |
| LS4021 (S. incanum) | ||
| Nakate Shinkuro | 163 | 163 |
| Senryo 2 | 163 | 163 |
| Shironasu | 163 | 163 |
| WCGR112-8 | 163 | 163 |
| White Egg | 155 | 155 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_06 | 60.7 |
| LW2010 | E_06 | 69.0 |
| LWA2010 | LWA_06 | 65.664 |
| LWAE2012 | E_06 | 71.255 |
| LWF2_2022 | E_06 | 83.1 |
| DB | Program | Definition | E-Value |
|---|---|---|---|
| TomatoBAC_end | BLASTN | SL_EcoRI0112L07_T7_321169 Chromat_file:SL_EcoRI_112_L07-T7 SGN_GSS_ID:337995 (vector and quality trimmed) | 1e-20 |
| EST Name | Species | Strain |
|---|
