Crop | eggplant |
---|---|
Population | AL2010 |
Linkage Group | E_07 |
Marker Type | SSR |
Map Position | 71.4 |
Annotation | |
Source Name | emf01E17 |
Source Type | genomic |
Source Sequence | CTGCCCCGCAACCAACTCCCACCCGTTCATCCAAACATGG ATTATTCTTCCTAATTAAATTAAATATTCTTCTTGATAAA AATTAGTGTTGTATGAAAGACTCTAATCATCATAAACCCT AATAATTAAAATTTAAAGAGGATTTTTCAAAATAAGTAAA CGCTTAAAATATAATAACTTAAAAATAATAATTATAGTGT GCTAAAATTACGAGGGGCGAAGGACATCGAGAAAGGGAGT ATGTCTATCTGTCAAATAATTAAATATGTGTAACTGATAT ATATATATATATCAAGCGAGATTGAGAGAGGGAGAAGAGA GGCGAGTGACAATGAGAGGGGGAAGAGAGAGGCGAGCGAG AGAGGCGAGTGAGAGAGGATAGAGAGTGGAGAGATATGAA TTGTATATGTATGTCTATTGAATTGAATATGTATATATGT CAAATAATAATATATATGCAATTGGTATGCATATGTATTT GTATATGTAGCAAAAGATTGCAGGAAAGATAGCAACAAAA TCATGTAG |
Developer | NIVTS |
Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
motif | (ta)7tcaagcgagattg(ag)3ggaga(ag)3gcgagtgacaatgagaggggga(ag)4gcgagcg(ag)3gcgagtg(ag)3gat(ag)3tg(ga)3 |
---|---|
PCR product (bp) | 296 |
fwd primer | emf01E17/U |
fwd primer seq. | cgaaggacatcgagaaagggagta |
rev primer | emf01E17/L |
rev primer seq. | gctatctttcctgcaatcttttgct |
fluor. primer | emf01E17/U_PET |
dye | PET |
fluor. Primer seq. | PET-agaaggacatcgagaaagggagta |
PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
polymerase | Roche Taq |
Line | allele-1 | allele-2 |
---|---|---|
AE-P03 | 296 | 296 |
EPL-1 | 296 | 296 |
LS1151 (S.linneanum) | ||
LS1934 | 334 | 334 |
LS4021 (S. incanum) | 311 | 311 |
Nakate Shinkuro | 296 | 296 |
Senryo 2 | 296 | 296 |
Shironasu | 339 | 339 |
WCGR112-8 | 296 | 296 |
White Egg | 335 | 335 |
Population | Linkage Group | Position |
---|---|---|
AL2010 | E_07 | 71.4 |
ALF2 | AL07 | 84.9 |
LW2010 | E_07 | 99.3 |
LWA2010 | LWA_07 | 96.834 |
LWAE2012 | E_07 | 93.544 |
LWF2_2022 | E_07 | 108.5 |
DB | Program | Definition | E-Value |
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EST Name | Species | Strain |
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