Crop | eggplant |
---|---|
Population | AL2010 |
Linkage Group | E_05 |
Marker Type | SSR |
Map Position | 52.7 |
Annotation | |
Source Name | emf01A06 |
Source Type | genomic |
Source Sequence | CTCCTTGTGATAATTGAGATCACCTGGATGTAAGACAAAA AACTAACAGACTTACAAAAATTTCCACATGCCTTCTGACA AGGGTGCGATTGGATTGTGGTAGTAGTCATTTCCAAGCTG AAAATATGAGAAAGGAAGAATGAGGTGAAAAATAACAGTG TTGGTAAGGCAAAAGTGTAGAAATATGCAATGTCAAGAAG GGCCTTTAATCACTACGTTCTTTTAGTCACTATGTTCCTA AAACATCATACGAAAGCCCTTAAGCCTACGTTATAATCCA ATAAAATCCTAAAGTGATCTTAGTCCAAGTTGTCAAAGGT CATAATCATGAGTACAGAGACAAGCATATGGTATTGCACA TGGTTTTTGAATGTCTTTTATGAGAAAGAAAGAGAGAGAG AGAGAGAGAGAGAGATTTTACATTGTCTCAAGCATTGAAA TTGAAAACATCATCATGAGAGGGATATGAGGCTTCTTTCT GAGAGGGCACTTGCATTATATTGGACTAACTCAGTGATTG TTGCTTGTTGATAATTTTCTTGCTTGTCATAGTTGTATTG TCACATATGTTGATCTGTGTTGGTTTACTTGATAG |
Developer | NIVTS |
Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
motif | (ag)12 |
---|---|
PCR product (bp) | 250 |
fwd primer | emf01A06/U |
fwd primer seq. | acatcatacgaaagcccttaagcc |
rev primer | emf01A06/L |
rev primer seq. | aagtgccctctcagaaagaagcct |
fluor. primer | emf01A06/U_NED |
dye | NED |
fluor. Primer seq. | NED-acatcatacgaaagcccttaagcc |
PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
polymerase | Roche Taq |
Line | allele-1 | allele-2 |
---|---|---|
AE-P03 | 254 | 254 |
EPL-1 | 253 | 253 |
LS1151 (S.linneanum) | 268 | 268 |
LS1934 | 253 | 253 |
LS4021 (S. incanum) | 254 | 254 |
Nakate Shinkuro | 252 | 252 |
Senryo 2 | 253 | 253 |
Shironasu | 253 | 253 |
WCGR112-8 | 255 | 255 |
White Egg | 255 | 255 |
Population | Linkage Group | Position |
---|---|---|
AL2010 | E_05 | 52.7 |
ALF2 | AL05 | 52.3 |
EW2009 | LG14 | 10.1 |
LW2010 | E_05 | 46.0 |
LWA2010 | LWA_05 | 45.41 |
LWAE2012 | E_05 | 46.762 |
LWF2_2022 | E_05 | 50.2 |
NAF2 | NA05.1 | 15.9 |
DB | Program | Definition | E-Value |
---|
EST Name | Species | Strain |
---|