Crop | eggplant |
---|---|
Population | AL2010 |
Linkage Group | E_03 |
Marker Type | SSR |
Map Position | 9.0 |
Annotation | |
Source Name | eme36B11 |
Source Type | genomic |
Source Sequence | TCCGACAAGAATCAATAACACAAGAAGTTTTATAAACATC CCGTAGCCTCTTTGAGATAAGTCACGGACGTCTCTGTACT TATCCACAAGACTCTACTAGAGGTTAGCTCTGTATAGATG AGACTAGTGAACCTTAAGCTCTGATAGCACCTTGTCACGA CCTAGTCACGGTCATGATGACGCATGTTAGATCTCACCTA CAGGCAAGCCAATTACCCTAAGCCACAGGGTACCTGTCCT AGCTCTCTTGGAAAACCATGGCAACCACAATAATATAAAT AACTAAAACCTACCCATAACCTGGAAGTCAACTGTACATA GCTACTATAAACTCAAATAAGATATATATATATATACATA TATATATATATGTGTGTGTGTGTGTGTGTGTACATACATA ACTAGAATAACAATCTACACATATAAATCTACTACATATA CAAGGCTAGTGCCTGAATACAAAAGACGACCGTCAAAACA AAAAGAGACTACAAAACATCCAAAGTTGTTGATGCTCACC ATTGTCTTCAGAATTGCTTGCAAACCCCTAACTCAATGAC TATAGCTAGTAACTGGACCTTAACCATTGGAAGA |
Developer | NIVTS |
Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
motif | (ta)7ca(ta)6(tg)10 |
---|---|
PCR product (bp) | 270 |
fwd primer | eme36B11/U |
fwd primer seq. | caagccaattaccctaagccacag |
rev primer | eme36B11/L |
rev primer seq. | gacggtcgtcttttgtattcaggc |
fluor. primer | eme36B11/U_PET |
dye | PET |
fluor. Primer seq. | PET-atagccaattaccctaagccacag |
PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
polymerase | Roche Taq |
Line | allele-1 | allele-2 |
---|---|---|
AE-P03 | 282 | 282 |
EPL-1 | 274 | 274 |
LS1151 (S.linneanum) | 249 | 249 |
LS1934 | 280 | 280 |
LS4021 (S. incanum) | ||
Nakate Shinkuro | 282 | 282 |
Senryo 2 | 282 | 282 |
Shironasu | 282 | 282 |
WCGR112-8 | 282 | 282 |
White Egg | 274 | 274 |
PI 286106 | 276 | 276 |
Population | Linkage Group | Position |
---|---|---|
AL2010 | E_03 | 9.0 |
EW2009 | LG10 | 32.1 |
LWA2010 | LWA_03 | 36.124 |
LWAE2012 | E_03 | 45.423 |
N28F2 | E_03 | 15.2 |
DB | Program | Definition | E-Value |
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EST Name | Species | Strain |
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