Crop | eggplant |
---|---|
Population | AL2010 |
Linkage Group | E_05 |
Marker Type | SSR |
Map Position | 54.0 |
Annotation | |
Source Name | eme36B08 |
Source Type | genomic |
Source Sequence | NNNNNNNNNNNNNCCCTGTCCCATCTTCTGATTCATTTTG TGTAGTTAGAGGTCTGTGGACACCTGTGCGTATGGGCTGG GACAGTTTGTATAACTATATATATATGATATGTATATTGG GCGGTTTAACCATAGCGATAACCTTGTCGGCCCGTATGAA TATATATATATATATGTGTGTGTGTGTGTGTGTGTGTGTG TGTGTGTGTATGTGTGCTGTTGGCTGGGACTTTTCTAGAT GTAGGGGTCGGATAGTCTATNNNNNGGGGGG |
Developer | NIVTS |
Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
motif | (ta)7(tg)17ta(tg)3 |
---|---|
PCR product (bp) | 228 |
fwd primer | eme36B08/U |
fwd primer seq. | ccctgtcccatcttctgattcatt |
rev primer | eme36B08/L |
rev primer seq. | catctagaaaagtcccagccaaca |
fluor. primer | eme36B08/U_FAM |
dye | FAM |
fluor. Primer seq. | FAM-acctgtcccatcttctgattcatt |
PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
polymerase | Roche Taq |
Line | allele-1 | allele-2 |
---|---|---|
AE-P03 | 230 | 230 |
EPL-1 | 235 | 235 |
LS1151 (S.linneanum) | ||
LS1934 | 235 | 235 |
LS4021 (S. incanum) | ||
Nakate Shinkuro | 230 | 230 |
Senryo 2 | 230 | 235 |
Shironasu | 236 | 236 |
WCGR112-8 | 239 | 239 |
White Egg | 237 | 237 |
PI 286106 | 236 | 236 |
Population | Linkage Group | Position |
---|---|---|
AL2010 | E_05 | 54.0 |
EW2009 | LG14 | 12.8 |
LW2010 | E_05 | 48.5 |
LWA2010 | LWA_05 | 46.934 |
LWAE2012 | E_05 | 48.604 |
LWF2_2022 | E_05 | 53.0 |
N28F2 | E_05 | 63.1 |
DB | Program | Definition | E-Value |
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EST Name | Species | Strain |
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