+Marker Data: eme12F11

Crop eggplant
Population AL2010
Linkage Group E_08
Marker Type SSR
Map Position 30.0
Annotation
Source Name eme12F11
Source Type genomic
Source Sequence ACTAATGACTCGGTTAAATGCGATAAATTATTTAAGGAAA CTACCTAATTACACAACATTGATACATATTTACTAATTCT TCTTATAGTTTGAAATAGTTACGTGTTGTCTCACTAATTA AAAATTTCATACTAGATTTCAAGTCGTATATACCTAAATA CATGTATTTATGCTACCAAATATACTCATTAATACAATTA AATTGGAAAGAGGTGAGTGAGAGACGAGTGAGAGAGAAGA GAGGAGAGAGGCAAGGTGTATCCCAGATACAAATGAATCA TACTAAAAACATTCTAGATACATTCTTAAATATATGCAGG TACATAGGGAGAGAGGCAAGCGTGAAACGAAGAGAGGCAA GGGAGAGAGAAGAGAGGAGAGAGGAGAGAGAGGCTAGTGA GAGAGTTCATGTATCTCAAATACATATGAATTCTTGGATG CAATGTGTTTGGAACAAATTGCATATAATTTTCACCTTAT ATATTCGTAATATATGTATTTTGAAACACCAAATAAACGA ATCTGAAGATCAAAATCTCGCACGAATAATAATTTTAAAA ATCTATAGATATATAATTAGATCTTAAACTAATAGTTTAT GTTGATTTTCTCATTGTTT
Developer NIVTS
Document Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153

motif (ag)3gcaagg(ga)4(ag)3(ga)3g(ga)4ggctagt(ga)3
PCR product (bp) 231
fwd primer eme12F11/U
fwd primer seq. gcaggtacatagggagagaggcaa
rev primer eme12F11/L
rev primer seq. ttcgtgcgagattttgatcttcag
fluor. primer eme12F11/U_PET
dye PET
fluor. Primer seq. PET-ACGCAGGTACATAGGGAGAGAGGCAA
PCR condition 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C
polymerase Roche Taq

Line allele-1 allele-2
AE-P03 234 234
EPL-1 234 234
LS1151 (S.linneanum) 220 220
LS1934 233 233
LS4021 (S. incanum) 227 227
Nakate Shinkuro 234 234
Senryo 2 234 234
Shironasu 233 233
WCGR112-8 234 234
White Egg 233 233

Population Linkage Group Position
AL2010 E_08 30.0
LW2010 E_08 38.4
LWA2010 LWA_08 32.442
LWAE2012 E_08 33.291
LWF2_2022 E_08 38.1

DB Program Definition E-Value
TomatoBAC_end BLASTN LE_HBa0073A13_T7_16537 Chromat_file:LE_HBa_073_A13-T7 SGN_GSS_ID:16537 (vector and quality trimmed) 2e-08
TomatoBAC_end BLASTN LE_HBa0017H01_SP6_130501 Chromat_file:LE_HBa_017_H01-SP6 SGN_GSS_ID:147332 (vector and quality trimmed) 9e-08
TomatoBAC_end BLASTN LE_HBa0042J19_T7_63061 Chromat_file:LE_HBa_042_J19-T7 SGN_GSS_ID:63061 (vector and quality trimmed) 9e-08
TomatoBAC_end BLASTN LE_HBa0122J21_SP6_57688 Chromat_file:LE_HBa_122_J21-SP6 SGN_GSS_ID:57688 (vector and quality trimmed) 9e-08
TomatoBAC_end BLASTN SL_EcoRI0128J06_SP6_333358 Chromat_file:SL_EcoRI_128_J06-SP6 SGN_GSS_ID:350184 (vector and quality trimmed) 1e-06

EST Name Species Strain