+Marker Data: eme08D09

Crop eggplant
Population AL2010
Linkage Group E_08
Marker Type SSR
Map Position 34.0
Annotation
Source Name eme08D09
Source Type genomic
Source Sequence CTGGATTAGCATGTGGAGGACTGAAGCCCTTCTGCATAAT TCCTTCAGCTTTCCTGCAAAGAGCCTATGACCAGGTTTCT CTCTCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT CTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCACACACA CACAGAGTAAGAAGACACAGGGCAGCTAGTGCAAATATCT AATAAATGATCTGGTTCTGTCTCCACCTACCATGAAATAA GAGGAATGGTCCTATGTATCAAGCACCATCACTTTTTAGC TGTGCACCTTTCTAGCTGTAGCAAGTAAAGGACCAATTTA TACAAGAAACACCCTAAATAGTTGGTTTAGAATTTGTTCA GTGGATTGAAAACCACTGAATTGTAGGTCTAGTCATTGAG TCATAGACTTCACAATTCTCATTTTCTTTTGTCTTAATTG ACACTTCCTACTATTGGATGAGGAAATGGAGAATTTAGTA ATTGCTACTAACGAGCTAGTCCATAGGAAAAAATTTCACT CAAGACATTTTTCTAGAAGTTTCACATATGCCCTCTTCTG GAAGGGTTACCATTTCTTTACTGTAAGCAGT
Developer NIVTS
Document Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153

motif (tc)5c(ct)20t(tc)12(ac)5
PCR product (bp)
fwd primer eme08D09/U
fwd primer seq. tggattagcatgtggaggactgaa
rev primer eme08D09/L
rev primer seq. tcatggtaggtggagacagaacca
fluor. primer eme08D09/U_FAM
dye FAM
fluor. Primer seq. FAM-ATGGATTAGCATGTGGAGGACTGAA
PCR condition 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C
polymerase Roche Taq

Line allele-1 allele-2
AE-P03 237 237
EPL-1 239 239
LS1151 (S.linneanum) 203 203
LS1934 213 213
LS4021 (S. incanum) 236 236
Nakate Shinkuro 239 239
Senryo 2 239 239
Shironasu 239 239
WCGR112-8 235 235
White Egg 211 211

Population Linkage Group Position
AL2010 E_08 34.0
ALF2 AL08 39.6
EW2009 LG07 42.7
LW2010 E_08 39.6
LWA2010 LWA_08 35.187
LWAE2012 E_08 35.81
LWF2_2022 E_08 41.5
N28F2 E_08 52.8

DB Program Definition E-Value

EST Name Species Strain