Crop | eggplant |
---|---|
Population | AL2010 |
Linkage Group | E_08 |
Marker Type | SSR |
Map Position | 34.0 |
Annotation | |
Source Name | eme08D09 |
Source Type | genomic |
Source Sequence | CTGGATTAGCATGTGGAGGACTGAAGCCCTTCTGCATAAT TCCTTCAGCTTTCCTGCAAAGAGCCTATGACCAGGTTTCT CTCTCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT CTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCACACACA CACAGAGTAAGAAGACACAGGGCAGCTAGTGCAAATATCT AATAAATGATCTGGTTCTGTCTCCACCTACCATGAAATAA GAGGAATGGTCCTATGTATCAAGCACCATCACTTTTTAGC TGTGCACCTTTCTAGCTGTAGCAAGTAAAGGACCAATTTA TACAAGAAACACCCTAAATAGTTGGTTTAGAATTTGTTCA GTGGATTGAAAACCACTGAATTGTAGGTCTAGTCATTGAG TCATAGACTTCACAATTCTCATTTTCTTTTGTCTTAATTG ACACTTCCTACTATTGGATGAGGAAATGGAGAATTTAGTA ATTGCTACTAACGAGCTAGTCCATAGGAAAAAATTTCACT CAAGACATTTTTCTAGAAGTTTCACATATGCCCTCTTCTG GAAGGGTTACCATTTCTTTACTGTAAGCAGT |
Developer | NIVTS |
Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
motif | (tc)5c(ct)20t(tc)12(ac)5 |
---|---|
PCR product (bp) | |
fwd primer | eme08D09/U |
fwd primer seq. | tggattagcatgtggaggactgaa |
rev primer | eme08D09/L |
rev primer seq. | tcatggtaggtggagacagaacca |
fluor. primer | eme08D09/U_FAM |
dye | FAM |
fluor. Primer seq. | FAM-ATGGATTAGCATGTGGAGGACTGAA |
PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
polymerase | Roche Taq |
Line | allele-1 | allele-2 |
---|---|---|
AE-P03 | 237 | 237 |
EPL-1 | 239 | 239 |
LS1151 (S.linneanum) | 203 | 203 |
LS1934 | 213 | 213 |
LS4021 (S. incanum) | 236 | 236 |
Nakate Shinkuro | 239 | 239 |
Senryo 2 | 239 | 239 |
Shironasu | 239 | 239 |
WCGR112-8 | 235 | 235 |
White Egg | 211 | 211 |
Population | Linkage Group | Position |
---|---|---|
AL2010 | E_08 | 34.0 |
ALF2 | AL08 | 39.6 |
EW2009 | LG07 | 42.7 |
LW2010 | E_08 | 39.6 |
LWA2010 | LWA_08 | 35.187 |
LWAE2012 | E_08 | 35.81 |
LWF2_2022 | E_08 | 41.5 |
N28F2 | E_08 | 52.8 |
DB | Program | Definition | E-Value |
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EST Name | Species | Strain |
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