Crop | eggplant |
---|---|
Population | AL2010 |
Linkage Group | E_10 |
Marker Type | SSR |
Map Position | 63.3 |
Annotation | |
Source Name | eme06E06 |
Source Type | genomic |
Source Sequence | ACTAGAAGCAACTAGCTTCCTATTTTATCATCCTCACATG AAACCTATTGCCTCTTTCTTCCTTTCAAAGTCCCCATCTC TCTCTCTCTCCCCTCTATATATTTCTATACAAAACTATAT CACTCACTAGAAAAGAACACAACAAAATCTCTCATATTTG CTTGCTACCACTATAATTTGTAAATTGATTAAATCTCTCC AAAAAAAAGATGATTCCAAATCCTCAAGACTCATCTATTT TACTTCAAAGAATCAACTCCAATAATACTTCTGATTGTAA ACAGCAATCACTACACCGCCACACACCAATACCATGCACC GCGCAAGTACCAGATTCCGTCGTCAAATACCACGCGCATC TAGTGGGACCCAATCAATGCTGCTCCGCAGCGATCCAGCG GATCTCAGCCCCGGTATCCACCGTATGGTCCGTCGTCCGC CGATTCGACAACCCT |
Developer | NIVTS |
Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
motif | (tc)7cc(ct)2(at)2 |
---|---|
PCR product (bp) | |
fwd primer | eme06E06/U |
fwd primer seq. | tctttcttcctttcaaagtcccca |
rev primer | eme06E06/L |
rev primer seq. | tttgacgacggaatctggtacttg |
fluor. primer | |
dye | |
fluor. Primer seq. | |
PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
polymerase | Roche Taq |
Line | allele-1 | allele-2 |
---|---|---|
AE-P03 | 294 | 294 |
EPL-1 | 294 | 294 |
LS1151 (S.linneanum) | ||
LS1934 | 296 | 296 |
LS4021 (S. incanum) | ||
Nakate Shinkuro | 294 | 294 |
Senryo 2 | 294 | 294 |
Shironasu | 296 | 296 |
WCGR112-8 | 296 | 296 |
White Egg | 296 | 296 |
Population | Linkage Group | Position |
---|---|---|
AL2010 | E_10 | 63.3 |
LWA2010 | LWA_10 | 60.101 |
LWAE2012 | E_10 | 63.466 |
DB | Program | Definition | E-Value |
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EST Name | Species | Strain |
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