+Marker Data: eme06E06

Crop eggplant
Population AL2010
Linkage Group E_10
Marker Type SSR
Map Position 63.3
Annotation
Source Name eme06E06
Source Type genomic
Source Sequence ACTAGAAGCAACTAGCTTCCTATTTTATCATCCTCACATG AAACCTATTGCCTCTTTCTTCCTTTCAAAGTCCCCATCTC TCTCTCTCTCCCCTCTATATATTTCTATACAAAACTATAT CACTCACTAGAAAAGAACACAACAAAATCTCTCATATTTG CTTGCTACCACTATAATTTGTAAATTGATTAAATCTCTCC AAAAAAAAGATGATTCCAAATCCTCAAGACTCATCTATTT TACTTCAAAGAATCAACTCCAATAATACTTCTGATTGTAA ACAGCAATCACTACACCGCCACACACCAATACCATGCACC GCGCAAGTACCAGATTCCGTCGTCAAATACCACGCGCATC TAGTGGGACCCAATCAATGCTGCTCCGCAGCGATCCAGCG GATCTCAGCCCCGGTATCCACCGTATGGTCCGTCGTCCGC CGATTCGACAACCCT
Developer NIVTS
Document Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153

motif (tc)7cc(ct)2(at)2
PCR product (bp)
fwd primer eme06E06/U
fwd primer seq. tctttcttcctttcaaagtcccca
rev primer eme06E06/L
rev primer seq. tttgacgacggaatctggtacttg
fluor. primer
dye
fluor. Primer seq.
PCR condition 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C
polymerase Roche Taq

Line allele-1 allele-2
AE-P03 294 294
EPL-1 294 294
LS1151 (S.linneanum)
LS1934 296 296
LS4021 (S. incanum)
Nakate Shinkuro 294 294
Senryo 2 294 294
Shironasu 296 296
WCGR112-8 296 296
White Egg 296 296

Population Linkage Group Position
AL2010 E_10 63.3
LWA2010 LWA_10 60.101
LWAE2012 E_10 63.466

DB Program Definition E-Value

EST Name Species Strain