+Marker Data: emd09F08

Crop eggplant
Population AL2010
Linkage Group E_07
Marker Type SSR
Map Position 12.1
Annotation
Source Name emd09F08
Source Type genomic
Source Sequence ATGTCTTAAAGACTTAAGTGGTGCCCACTTGGTACACTTG GCAAGTCTTGCGCGCGCGCGCGCGCGCACACACACACACA CACACACACACATATATATGTTAGAGCCCGTATCTTGGTG TTTTGGAACCATTGCGAACTTTGGGACCAACATTGTCATT TTCGAAAAACTTGACACTTAAGTGTACTTTTGAAGAAATT GAGAATTTAAGTTGGAATTTTCTTTAAAATGTGAGTAGAA ATTTATGGATGTTTATATGTTGGAAATATAATTCTAGAAT TTTCAAGTATGTAATGTTGTGATTGGTCCAAGTTTCTTTT GACCAAGTTATTATTTCATTAAAAGGTTTTGGGAT
Developer NIVTS
Document Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153

motif (cg)8c(ac)12a(ta)3
PCR product (bp) 119
fwd primer emd09F08/U
fwd primer seq. agtggtgcccacttggtacacttg
rev primer emd09F08/L
rev primer seq. gcaatggttccaaaacaccaagat
fluor. primer emd09F08/U_PET
dye PET
fluor. Primer seq. PET-agtggtgcccacttggtacacttg
PCR condition 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C
polymerase Roche Taq

Line allele-1 allele-2
AE-P03 110 110
EPL-1 114 114
LS1151 (S.linneanum) 115 115
LS1934 114 114
LS4021 (S. incanum)
Nakate Shinkuro 114 114
Senryo 2 114 114
Shironasu 114 114
WCGR112-8 114 114
White Egg 114 114

Population Linkage Group Position
AL2010 E_07 12.1
LWA2010 LWA_07 39.736
LWAE2012 E_07 34.089

DB Program Definition E-Value

EST Name Species Strain