Crop | eggplant |
---|---|
Population | AL2010 |
Linkage Group | E_09 |
Marker Type | SSR |
Map Position | 39.7 |
Annotation | |
Source Name | emd03C01 |
Source Type | genomic |
Source Sequence | CCTATTTTTCCATTTTAGTCGTAATTAACCTATGTTCTCC CATTTCTTGAGATATTATAGCCAAAACAACCATAATTATA TTGTGTTTCTTATTTTGACAGTTAGGCAGTATTTAGAGGT AGTCATATAGGGTAAAACATGCATGGACTGATTTAGAGTA TGTGAACTCGCCTTCTAGGTAGGCTAGGCTTTCCTTACCT CTAGACTGAGCTAAAATGCATGTATATTGGGAGTTGTTTG TTGGAAGTCCTGAGTAAGATATATATATGTGTGTGTGTGT GTGTGTGTGTGAAGCTGATTGTTAGTTATATTTCTTGCTA TGCATTTAAACACTGTTGTCATGATTTGCTAACACCTGTC GTCCTGGATATTCTGTGTACTTAGCATATGAGGTAACTAC CGTTATTATGGGATACTTGTGGTTGTTCTGGACTGTACTA GGTGTGACCACTATAGTGGCTGAGTTCTAGCACTGTATAA CTGTCACGACCCAAAAATTTGGGAGTGATGGCACTCGTCT TATCCCACAAAGACAAGTCAGCCTACAACCTAGCTACAAC ATTAAGAATACAAAATTATAATAAAAGTGAAAGTTTAATT GCGGATAATAAGT |
Developer | NIVTS |
Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
motif | (ta)4(tg)12 |
---|---|
PCR product (bp) | 274 |
fwd primer | emd03C01/U |
fwd primer seq. | gggagttgtttgttggaagtcctg |
rev primer | emd03C01/L |
rev primer seq. | ccaaatttttgggtcgtgacagtt |
fluor. primer | emd03C01/U_VIC |
dye | VIC |
fluor. Primer seq. | VIC-ACGGGAGTTGTTTGTTGGAAGTCCTG |
PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
polymerase | Roche Taq |
Line | allele-1 | allele-2 |
---|---|---|
AE-P03 | 270 | 270 |
EPL-1 | 282 | 282 |
LS1151 (S.linneanum) | ||
LS1934 | 270 | 270 |
LS4021 (S. incanum) | ||
Nakate Shinkuro | ||
Senryo 2 | ||
Shironasu | ||
WCGR112-8 | 270 | 270 |
White Egg | 294 | 294 |
Population | Linkage Group | Position |
---|---|---|
AL2010 | E_09 | 39.7 |
ALF2 | AL09 | 48.1 |
EW2009 | LG06 | 88.2 |
LWA2010 | LWA_09 | 45.018 |
LWAE2012 | E_09 | 32.726 |
NAF2 | NA09 | 43.0 |
DB | Program | Definition | E-Value |
---|---|---|---|
TomatoBAC_end | BLASTN | LE_HBa0031D15_T7_139554 Chromat_file:LE_HBa_031_D15-T7 SGN_GSS_ID:156385 (vector and quality trimmed) | 1e-19 |
TomatoBAC_end | BLASTN | LE_HBa0219N03_SP6_396652 Chromat_file:LE_HBa_219_N03-SP6 SGN_GSS_ID:413846 (vector and quality trimmed) | 7e-18 |
TomatoBAC_end | BLASTN | LE_HBa0219N02_SP6_396648 Chromat_file:LE_HBa_219_N02-SP6 SGN_GSS_ID:413842 (vector and quality trimmed) | 7e-18 |
TomatoBAC_end | BLASTN | SL_MboI0139O11_T7_361678 Chromat_file:SL_MboI_139_O11-T7 SGN_GSS_ID:378889 (vector and quality trimmed) | 7e-18 |
TomatoBAC_end | BLASTN | SL_MboI0112C20_T7_197048_2 Chromat_file:SL_MboI_112_C20-T7 SGN_GSS_ID:376742 (vector and quality trimmed) | 7e-18 |
EST Name | Species | Strain |
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