+Marker Data: emd01F12

Crop eggplant
Population AL2010
Linkage Group E_02
Marker Type SSR
Map Position 0.7
Annotation
Source Name emd01F12
Source Type genomic
Source Sequence CCCCCGTCATACCCAAAAGTGAAAGTAATACAAAGTAATA ACAAAGTAATAACAAAGTAAGTATACCAAAATATAGCTTC GAAGCAAGGGAGCACTTCAGACTACAAACTGAGGTCCTAA TCTGGAGGTCCGCTACCCTGTGCGTCTGAACCTGCGAGCA TGAAACGCAGCCCCTGAAGGAAGGGGGTCAGTACGAAGGA CGTACCAAATATGTAAAGCAGAAAGTACACACACACACAC ACACACACACACACACACATATATATATATATATATATAA GAAAGGCAAACTGAACATGGGCATAGGACTTAATTTTCTG TGCAAATATCAAAGAAGGGTTTAACTCATTTTCAAAATGT CGAAGGAACATTTGTATATTTATTAAAATAACTTGCAAAG GCTCAACGGACCGGAAAGATGGCGTCCTCCAATCTCGCGC CATACCACAGCATCACACTAGATAGTTTAATCCCGAAAGT CTCCAACATAATCACAAATGTAGGATGTGTGAGCTGGCGT CCCAGT
Developer NIVTS
Document Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153

motif (ac)16(at)10
PCR product (bp) 298
fwd primer emd01F12/U
fwd primer seq. ggtcctaatctggaggtccgctac
rev primer emd01F12/L
rev primer seq. tccgttgagcctttgcaagttatt
fluor. primer
dye
fluor. Primer seq.
PCR condition 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C
polymerase Roche Taq

Line allele-1 allele-2

Population Linkage Group Position
AL2010 E_02 0.7
LWA2010 LWA_02 1.495
LWAE2012 E_02 2.145

DB Program Definition E-Value
TomatoBAC_end BLASTN LE_HBa0225B19_T7_401647 Chromat_file:LE_HBa_225_B19-T7 SGN_GSS_ID:418841 (vector and quality trimmed) 5e-06

EST Name Species Strain