| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_03 |
| Marker Type | SSR |
| Map Position | 7.8 |
| Annotation | |
| Source Name | emd01F10 |
| Source Type | genomic |
| Source Sequence | CCATAGACACCTCAAATAAAATTGCACTCAATAAAAGACT GAAGATTAAGAGGGCTTCTACGAAATATAAGGAGAGCTCA CAAACTCTGAGGTGTACGATCCAAATTTCAGCGGTGCACG GGCTGAAGTCCTCTATCTCTAGTATCTGCATCATAAAATG ATGCAGCACCAAAGGCGTCAGTACATGGAATATATGATAA GTCCAACGGCTCAAATATAATAATAACAATAATAATAAGC TCAAAAATACATACCTCGACTCCTCAACTTATGCTCAGCT CAGTACATAACAGTTTAGAATATTTCATAGGTTCAAATGA TATATATATATATGTGTGTGTGTGTGTGTGTGTGTGTGTA TGTGTGTGTGTAGTGAAAGTAAACTCAAGTTTGCAAATCT CATGTTCAATCAAAGTTGCTTAGGAGTTTCTCTTAACCGA CATACCTCCCACCACCATACGTTAGGTGATGTACAATGAA TCAACATTGTTTCCATGCCCGTTGTATACGTGCCACGGCA TAGGACGATTAACTCTCTCTTGGATCAAAGGTAAATGTCC ACTTGTAGGACAAGTCACCAGAACGATATTGTGTGACTAT |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (ta)6(tg)13ta(tg)5 |
|---|---|
| PCR product (bp) | 298 |
| fwd primer | emd01F10/U |
| fwd primer seq. | ccaaaggcgtcagtacatggaata |
| rev primer | emd01F10/L |
| rev primer seq. | cctaacgtatggtggtgggaggta |
| fluor. primer | emd01F10/U_PET |
| dye | PET |
| fluor. Primer seq. | PET-ACCAAAGGCGTCAGTACATGGAATA |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 304 | 304 |
| EPL-1 | 302 | 302 |
| LS1151 (S.linneanum) | ||
| LS1934 | 302 | 302 |
| LS4021 (S. incanum) | ||
| Nakate Shinkuro | 302 | 302 |
| Senryo 2 | 302 | 302 |
| Shironasu | 302 | 302 |
| WCGR112-8 | 304 | 304 |
| White Egg | 304 | 304 |
| PI 286106 | 306 | 306 |
| Population | Linkage Group | Position |
|---|---|---|
| ALF2 | AL03 | 0.0 |
| NAF2 | NA03.1 | 29.9 |
| LWA2010 | LWA_03 | 35.044 |
| AL2010 | E_03 | 7.8 |
| LW2010 | E_03 | 35.0 |
| EW2009 | LG10 | 30.5 |
| LWAE2012 | E_03 | 44.614 |
| LWF2_2022 | E_03 | 33.4 |
| N28F2 | E_03 | 9.8 |
| DB | Program | Definition | E-Value |
|---|
| EST Name | Species | Strain |
|---|
