Crop | eggplant |
---|---|
Population | AL2010 |
Linkage Group | E_07 |
Marker Type | SSR |
Map Position | 16.1 |
Annotation | |
Source Name | emd01B12 |
Source Type | genomic |
Source Sequence | TCAATAGCTTGCCACTTGGCTTAACCACATTGCAAACTGT TCTCCTTAATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT GTTATGTTGTATCATGTCTATAGTAGTTCTGTGTAGGTGA CTTCCAGGTCTTGGGAGGGTTGGTCTAGTGTTGTATATTT ATATATCTAGTACCAGTTCAACTTTATAATGCTAGTGCTT TTACCGAATCGTTTCTTGCACGCACTCGTTACTAGCCTTT CCAGGTTTGGGTTAGGTTTCCTTATCGGGGAGTTAAGGTA AGCACCATCATGACTTGTATAGTCGGATTGTGATATTATA TTAAATTGAGAATACATTAGTCTACATTAACATTGTGGAT TACTATAATTAGATTAATTAAATTAGTTCAATAACATTTG ATCATTTAATTAAAAGTCCAAATTCATTTATTTGGGCTGT AAAAGATGATTCACTTTACCAGG |
Developer | NIVTS |
Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
motif | (tg)16 |
---|---|
PCR product (bp) | 262 |
fwd primer | emd01B12/U |
fwd primer seq. | tcaatagcttgccacttggcttaac |
rev primer | emd01B12/L |
rev primer seq. | aggaaacctaacccaaacctggaa |
fluor. primer | emd01B12/U_VIC |
dye | VIC |
fluor. Primer seq. | VIC-ATCAATAGCTTGCCACTTGGCTTAAC |
PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
polymerase | Roche Taq |
Line | allele-1 | allele-2 |
---|---|---|
AE-P03 | 265 | 265 |
EPL-1 | 271 | 271 |
LS1151 (S.linneanum) | ||
LS1934 | 274 | 274 |
LS4021 (S. incanum) | ||
Nakate Shinkuro | 282 | 282 |
Senryo 2 | 273 | 273 |
Shironasu | 273 | 273 |
WCGR112-8 | 273 | 273 |
White Egg | 273 | 273 |
Population | Linkage Group | Position |
---|---|---|
AL2010 | E_07 | 16.1 |
EW2009 | LG02 | 64.1 |
LWA2010 | LWA_07 | 39.138 |
LWAE2012 | E_07 | 32.882 |
DB | Program | Definition | E-Value |
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EST Name | Species | Strain |
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