Crop | eggplant |
---|---|
Population | AL2010 |
Linkage Group | E_01 |
Marker Type | SSR |
Map Position | 123.3 |
Annotation | |
Source Name | EMB01I13 |
Source Type | genomic |
Source Sequence | CCCAAGTACAAGACGAAAGTGTGCAGACCAGAACCTTTAA GAACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACAA AGATGAATGAGGAATAACAAAAATATAATTGAGAGTAAAA TAAATCGCAACTGTAATTACCACCAATGTCACTTCCAGAA AATTCTATAAATAATAAAACTTTCAAAAACCAGCAATAGA GCAGTAATATTCTGTTGAGAAAGATTAGGTTAAGGGACCA GAACCAAAATGATTTAAAAGCTAAACTGCACGGACTCTTC ACTTTCAATGCCGCACCCGTGTTAGATTCTTCGAAAATAC ACTACTTTGGGCGAATCCGACACGCACCCACACTTTTAAA GAGTCCGAGCAACATAGCTTAAAAGTGCAAATATGATCTC TCTAATAAAGAAAGCTCATCCAAAATTATTCTAATATAAT GATCCTTATTCTGCACCAAACATGATTTCAACGGAGAAAA CACCCAAACAGTAAATTCAGTTAAGATGCTTGCTTAGTAT CTTGCCTCAAATAGTCAGAATATGAGTGTCCTGCCTCATG ACTGAATGTGATAACATTTTGATTATCATGCAAAACATTC ACCAGATN |
Developer | NIVTS |
Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
motif | (AG)16 |
---|---|
PCR product (bp) | 333 |
fwd primer | |
fwd primer seq. | acaagacgaaagtgtgcagaccag |
rev primer | EMB01I13pt |
rev primer seq. | gtttcggattcgcccaaagtagtgtat |
fluor. primer | |
dye | FAM |
fluor. Primer seq. | FAM-ACAAGACGAAAGTGTGCAGACCAG |
PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
polymerase | Roche Taq |
Line | allele-1 | allele-2 |
---|
Population | Linkage Group | Position |
---|---|---|
AL2010 | E_01 | 123.3 |
EW2009 | LG03 | 35.3 |
LWA2010 | LWA_01 | 105.684 |
LWAE2012 | E_01 | 106.38 |
DB | Program | Definition | E-Value |
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EST Name | Species | Strain |
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