Crop | eggplant |
---|---|
Population | AL2010 |
Linkage Group | E_08 |
Marker Type | SSR |
Map Position | 34.0 |
Annotation | |
Source Name | EMB01A21 |
Source Type | genomic |
Source Sequence | ACTGCTTACAGTAAAGAAATGGTAACCCTTCCAGAAGAGG GCATATGTGAAACTTCTAGAAAAATGTCTTGAGTGAAATT TTTTCCTATGGACTAGCTCGTTAGTAGCAATTACTAAATT CTCCATTTCCTCATCCAATAGTAGGAAGTGTCAATTAAGA CAAAAGAAAATGAGAATTGTGAAGTCTATGACTCAATGAC TAGACCTACAATTCAGTGGTTTTCAATCCACTGAACAAAT TCTAAACCAACTATTTAGGGTGTTTCTTGTATAAATTGGT CCTTTACTTGCTACAGCTAGAAAGGTGCACAGCTAAAAAG TGATGGTGCTTGGTACATAGGACCATTCCTCTTATTTCAT GGTAGGTGGAGACAGAACCAGATCATTTATTAGATATTTG CACTAGCTGCCCTGTGTCTTCTTACTCTGTGTGTGTGTGT GAGAGAGAGAGAGAGAGAGAGAAAGAGAGAGAGAGAGAGA GAGAGAGAGAGAGAGAGAGAGAGAGGGAGAGAGAGAAACC TGGTCATAGGCTCTTTGCAGGAAAGCTGAAGGAATTATGC AGAAGGGCTTCAGTCCTCCACATGCTAATCCAG |
Developer | NIVTS |
Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
motif | (AG)21 |
---|---|
PCR product (bp) | 236 |
fwd primer | |
fwd primer seq. | tcatggtaggtggagacagaacca |
rev primer | EMB01A21pt |
rev primer seq. | gtttggattagcatgtggaggactgaa |
fluor. primer | |
dye | FAM |
fluor. Primer seq. | FAM-TCATGGTAGGTGGAGACAGAACCA |
PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
polymerase | Roche Taq |
Line | allele-1 | allele-2 |
---|
Population | Linkage Group | Position |
---|---|---|
AL2010 | E_08 | 34.0 |
EW2009 | LG07 | 37.2 |
LWA2010 | LWA_08 | 36.086 |
LWAE2012 | E_08 | 36.783 |
DB | Program | Definition | E-Value |
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EST Name | Species | Strain |
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