+Marker Data: EMA0050

Crop eggplant
Population AL2010
Linkage Group E_02
Marker Type SSR
Map Position 0.1
Annotation
Source Name EMA0050
Source Type genomic
Source Sequence AAGCTTATCATAAAACATGAAAGAGTTTGTAGTCAAATGT GAGAGTCACCATTAATTGACATTAACCATGTGAGCTATAA CATGGAATCCTAGCGTTACCCCTACACCGGAGGAAAGAAG GAGTCACTTTCCAAGGTGAACATCCAGTTGCCTAAGTGGA TCCACTAAAGCTAACTAGTGAGCAAGCCTTTACTAATAGG TGGTCCATCTAAGGAGTCAAGCCTCATCTAGCGGATGATC CCTCTAGGAGTCAAAATCATCTAACGGGTGATCCTTTGAC CTATAGTGGCACGTAGTTATAGGACAATGAGATTCACTAC TAATGGGTTTATATATATGTGTGTGTGTGTGTGTGTGTGT GTGTATGTGCGCATACTTACTACATTCAAATGTACTATTG CATACTCTATGCCTATGTCATATCGTAATGTAACTGCAGG TGATCCTATTGTCCATTCCTGTGGCTAGATCCATACACTT AGACAATCTAGATTGGGTGAGCCTAATCCTTCAATGACAA GGAAGCTT
Developer NIVTS
Document Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153

motif (TA)4(TG)13
PCR product (bp) 374
fwd primer
fwd primer seq. cctacaccggaggaaagaaggagt
rev primer
rev primer seq. atggatctagccacaggaatggac
fluor. primer
dye HEX
fluor. Primer seq. HEX-CCTACACCGGAGGAAAGAAGGAGT
PCR condition 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C
polymerase Roche Taq

Line allele-1 allele-2

Population Linkage Group Position
AL2010 E_02 0.1
LWA2010 LWA_02 0.921
LWAE2012 E_02 1.572

DB Program Definition E-Value

EST Name Species Strain