+Marker Data: AFS117

Crop bunching_onion
Population DJF2
Linkage Group Chr4b
Marker Type SSR
Map Position 46.9
Annotation
Source Name AB499331
Source Type genomic
Source Sequence
Developer NIVTS
Document Tsukazaki et al. (2008) Theor Appl Genet 117:1213-1223

motif (ac)4gc(ac)4
PCR product (bp) 266
fwd primer AFS117-F
fwd primer seq. attccaaatgagattccttctttcg
rev primer AFS117-R
rev primer seq. ttgtactgaccatagtgttccatcg
fluor. primer
dye
fluor. Primer seq.
PCR condition 94C_2min->(94C_30s->60C_30s,-1C/cyc->72C_30s)x10->(94C_30s->50C_30s->72C_30s)x35->72C_4min->10C
polymerase Toyobo rTaq DNA polymerase
Genebank No. AB499331
annotation
similar marker
product size in J 260
product size in Kaizuka-Wase
product size in Iki-White
product size in Tender Pole

Line allele-1 allele-2
C1s-11s-25s-7
Cho1s-1s-2s-2s-8s
D1s-15s-10s-8 290 290
F1s-7s-17s-3s-1
J1s-14s-23s-9 270 270
K1s-5s-2s-2s-4s-5
Chiang_mai
Kaizuka_Wase

Population Linkage Group Position
DJF2 Chr4b 46.9

DB Program Definition E-Value

EST Name Species Strain