+Marker Data: AFRA11F11

Crop bunching_onion
Population DJF2
Linkage Group Chr2a
Marker Type SSR
Map Position 304.7
Annotation
Source Name AB499520
Source Type genomic
Source Sequence
Developer NIVTS
Document Tsukazaki et al. (2008) Theor Appl Genet 117:1213-1223

motif (ct)3atggtttttaagcatcatatacat(ac)5a(ta)3t(ac)4atatacataca(ta)5t(ac)9
PCR product (bp) 198
fwd primer AFRA11F11-U
fwd primer seq. acgccattagtgagagactacgtg
rev primer AFRA11F11-L
rev primer seq. gtttgggcaaacggttacatatagccaa
fluor. primer
dye
fluor. Primer seq.
PCR condition 94C_2min->(94C_30s->65C_30s,-1C/cyc->72C_30s)x10->(94C_30s->55C_30s->72C_30s)x35->72C_4min->10C
polymerase Toyobo rTaq DNA polymerase
Genebank No. AB499520
annotation
similar marker
product size in J 200
product size in Kaizuka-Wase 220
product size in Iki-White 170
product size in Tender Pole

Line allele-1 allele-2
C1s-11s-25s-7
Cho1s-1s-2s-2s-8s 217 217
D1s-15s-10s-8 220 220
F1s-7s-17s-3s-1
J1s-14s-23s-9 200 200
K1s-5s-2s-2s-4s-5 213 213
Chiang_mai 160 160
Kaizuka_Wase

Population Linkage Group Position
DJF2 Chr2a 304.7
KiCF2 2a 154.5

DB Program Definition E-Value

EST Name Species Strain