+Marker Data: AFRA04D09

Crop bunching_onion
Population DJF2
Linkage Group Chr4b
Marker Type SSR
Map Position 26.4
Annotation
Source Name AB499516
Source Type genomic
Source Sequence
Developer NIVTS
Document Tsukazaki et al. (2007) Euphytica 157:83-94

motif (tg)3tatgtgtatctaca(tg)3ca(tg)7tatatttatatgtatg(ta)3
PCR product (bp) 145
fwd primer AFRA04D09-U
fwd primer seq. atagcggggaatttatcctggttc
rev primer AFRA04D09-L
rev primer seq. gtttcgatacgcccaacttactcgactt
fluor. primer AFRA04D09-F(VIC)
dye VIC
fluor. Primer seq. VIC-atagcggggaatttatcctggttc
PCR condition 94C_2min->(94C_30s->65C_30s,-1C/cyc->72C_30s)x10->(94C_30s->55C_30s->72C_30s)x35->72C_4min->10C
polymerase Toyobo rTaq DNA polymerase
Genebank No. AB499516
annotation
similar marker
product size in J 140
product size in Kaizuka-Wase 140
product size in Iki-White
product size in Tender Pole

Line allele-1 allele-2
C1s-11s-25s-7 147 147
Cho1s-1s-2s-2s-8s 149 149
D1s-15s-10s-8 147 147
F1s-7s-17s-3s-1 151 151
J1s-14s-23s-9 151 151
K1s-5s-2s-2s-4s-5 147 147
Chiang_mai
Kaizuka_Wase

Population Linkage Group Position
DJF2 Chr4b 26.4
KiCF2 4b 44.0

DB Program Definition E-Value

EST Name Species Strain