+Marker Data: AFRA00B10

Crop bunching_onion
Population DJF2
Linkage Group Chr2a
Marker Type SSR
Map Position 133.3
Annotation
Source Name AB499510
Source Type genomic
Source Sequence
Developer NIVTS
Document Tsukazaki et al. (2008) Theor Appl Genet 117:1213-1223

motif (ta)8(tg)9ttcatgcatg(ta)3
PCR product (bp) 207
fwd primer AFRA00B10-U
fwd primer seq. atgaatcatgcctgctgtcacata
rev primer AFRA00B10-L
rev primer seq. gtttagaccacaaccgaatgcacaact
fluor. primer AFRA00B10-F(NED)
dye NED
fluor. Primer seq. NED-atgaatcatgcctgctgtcacata
PCR condition 94C_2min->(94C_30s->65C_30s,-1C/cyc->72C_30s)x10->(94C_30s->55C_30s->72C_30s)x35->72C_4min->10C
polymerase Toyobo rTaq DNA polymerase
Genebank No. AB499510
annotation
similar marker
product size in J 200
product size in Kaizuka-Wase 210
product size in Iki-White 180
product size in Tender Pole 190

Line allele-1 allele-2
C1s-11s-25s-7 213 213
Cho1s-1s-2s-2s-8s 207 207
D1s-15s-10s-8 205 213
F1s-7s-17s-3s-1 209 209
J1s-14s-23s-9 201 201
K1s-5s-2s-2s-4s-5 207 207
Chiang_mai 189 189
Kaizuka_Wase

Population Linkage Group Position
DJF2 Chr2a 133.3
FA 2a 28.2
SaT03 2a 122.2

DB Program Definition E-Value

EST Name Species Strain