Crop | bunching_onion |
---|---|
Population | DJF2 |
Linkage Group | Chr2a |
Marker Type | SSR |
Map Position | 133.3 |
Annotation | |
Source Name | AB499510 |
Source Type | genomic |
Source Sequence | |
Developer | NIVTS |
Document | Tsukazaki et al. (2008) Theor Appl Genet 117:1213-1223 |
motif | (ta)8(tg)9ttcatgcatg(ta)3 |
---|---|
PCR product (bp) | 207 |
fwd primer | AFRA00B10-U |
fwd primer seq. | atgaatcatgcctgctgtcacata |
rev primer | AFRA00B10-L |
rev primer seq. | gtttagaccacaaccgaatgcacaact |
fluor. primer | AFRA00B10-F(NED) |
dye | NED |
fluor. Primer seq. | NED-atgaatcatgcctgctgtcacata |
PCR condition | 94C_2min->(94C_30s->65C_30s,-1C/cyc->72C_30s)x10->(94C_30s->55C_30s->72C_30s)x35->72C_4min->10C |
polymerase | Toyobo rTaq DNA polymerase |
Genebank No. | AB499510 |
annotation | |
similar marker | |
product size in J | 200 |
product size in Kaizuka-Wase | 210 |
product size in Iki-White | 180 |
product size in Tender Pole | 190 |
Line | allele-1 | allele-2 |
---|---|---|
C1s-11s-25s-7 | 213 | 213 |
Cho1s-1s-2s-2s-8s | 207 | 207 |
D1s-15s-10s-8 | 205 | 213 |
F1s-7s-17s-3s-1 | 209 | 209 |
J1s-14s-23s-9 | 201 | 201 |
K1s-5s-2s-2s-4s-5 | 207 | 207 |
Chiang_mai | 189 | 189 |
Kaizuka_Wase |
Population | Linkage Group | Position |
---|---|---|
DJF2 | Chr2a | 133.3 |
FA | 2a | 28.2 |
SaT03 | 2a | 122.2 |
DB | Program | Definition | E-Value |
---|
EST Name | Species | Strain |
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