+Marker Data: AFB04A09

Crop bunching_onion
Population DJF2
Linkage Group Chr3a
Marker Type SSR
Map Position 78.1
Annotation
Source Name AB499475
Source Type genomic
Source Sequence
Developer NIVTS
Document Tsukazaki et al. (2007) Euphytica 157:83-94

motif (ag)3aaagagaa(ag)13
PCR product (bp) 260
fwd primer AFB04A09-U
fwd primer seq. actagagtcattgcgagacggagg
rev primer AFB04A09-L
rev primer seq. gtttcttttgttgagcggaagtcagca
fluor. primer AFB04A09-F(VIC)
dye VIC
fluor. Primer seq. VIC-actagagtcattgcgagacggagg
PCR condition 94C_2min->(94C_30s->65C_30s,-1C/cyc->72C_30s)x10->(94C_30s->55C_30s->72C_30s)x35->72C_4min->10C
polymerase Toyobo rTaq DNA polymerase
Genebank No. AB499475
annotation
similar marker
product size in J 260
product size in Kaizuka-Wase 260
product size in Iki-White
product size in Tender Pole

Line allele-1 allele-2
C1s-11s-25s-7 250 252
Cho1s-1s-2s-2s-8s 268 268
D1s-15s-10s-8 272 272
F1s-7s-17s-3s-1 250 252
J1s-14s-23s-9 260 260
K1s-5s-2s-2s-4s-5 252 252
Chiang_mai - -
Kaizuka_Wase

Population Linkage Group Position
DJF2 Chr3a 78.1
KiCF2 3a 368.7

DB Program Definition E-Value

EST Name Species Strain