+Marker Data: AFAT13F12

Crop bunching_onion
Population DJF2
Linkage Group Chr3a
Marker Type SSR
Map Position 154.6
Annotation
Source Name AB499465
Source Type genomic
Source Sequence
Developer NIVTS
Document Tsukazaki et al. (2008) Theor Appl Genet 117:1213-1223

motif (ac)3gcgcacgcacacgcgc(ac)15a(ta)6tc(tg)5
PCR product (bp) 213
fwd primer AFAT13F12-U
fwd primer seq. acaaaatttcatttgtaggatttcatttgttt
rev primer AFAT13F12-L
rev primer seq. gtttgtttgttatcatcaaataggagagattgt
fluor. primer
dye
fluor. Primer seq.
PCR condition 94C_2min->(94C_30s->65C_30s,-1C/cyc->72C_30s)x10->(94C_30s->55C_30s->72C_30s)x35->72C_4min->10C
polymerase Toyobo rTaq DNA polymerase
Genebank No. AB499465
annotation
similar marker
product size in J
product size in Kaizuka-Wase
product size in Iki-White
product size in Tender Pole

Line allele-1 allele-2
C1s-11s-25s-7 240 240
Cho1s-1s-2s-2s-8s
D1s-15s-10s-8 220 220
F1s-7s-17s-3s-1 230 230
J1s-14s-23s-9 240 240
K1s-5s-2s-2s-4s-5
Chiang_mai
Kaizuka_Wase

Population Linkage Group Position
DJF2 Chr3a 154.6
SaT03 3a 85.0

DB Program Definition E-Value

EST Name Species Strain