+Marker Data: AFAT10C04

Crop bunching_onion
Population DJF2
Linkage Group Chr3a
Marker Type SSR
Map Position 74.6
Annotation
Source Name AB499462
Source Type genomic
Source Sequence
Developer NIVTS
Document Tsukazaki et al. (2008) Theor Appl Genet 117:1213-1223

motif (ta)6(tg)13a(ta)4(tg)5tatcatatacg(tg)4tatatcta(tg)5
PCR product (bp) 263
fwd primer AFAT10C04-U
fwd primer seq. atggatgtttgtgaccatttttgg
rev primer AFAT10C04-L
rev primer seq. gtttcgatagatatgcgggttgttacat
fluor. primer
dye
fluor. Primer seq.
PCR condition 94C_2min->(94C_30s->65C_30s,-1C/cyc->72C_30s)x10->(94C_30s->55C_30s->72C_30s)x35->72C_4min->10C
polymerase Toyobo rTaq DNA polymerase
Genebank No. AB499462
annotation
similar marker
product size in J
product size in Kaizuka-Wase
product size in Iki-White
product size in Tender Pole

Line allele-1 allele-2
C1s-11s-25s-7 230 280
Cho1s-1s-2s-2s-8s
D1s-15s-10s-8 230 230
F1s-7s-17s-3s-1 280 280
J1s-14s-23s-9 230 280
K1s-5s-2s-2s-4s-5
Chiang_mai
Kaizuka_Wase

Population Linkage Group Position
DJF2 Chr3a 74.6
SaT03 8a 150.0

DB Program Definition E-Value

EST Name Species Strain