+Marker Data: AFAT05F03

Crop bunching_onion
Population DJF2
Linkage Group Chr2a
Marker Type SSR
Map Position 176.4
Annotation
Source Name AB499456
Source Type genomic
Source Sequence
Developer NIVTS
Document Tsukazaki et al. (2007) Euphytica 157:83-94

motif (ac)4aga(ta)9
PCR product (bp) 214
fwd primer AFAT05F03-U
fwd primer seq. agtcagtgggtttatctacgaaaagg
rev primer AFAT05F03-L
rev primer seq. gtttcaatctaaccgtcccctaatcca
fluor. primer AFAT05F03-F(FAM)
dye FAM
fluor. Primer seq. FAM-agtcagtgggtttatctacgaaaagg
PCR condition 94C_2min->(94C_30s->65C_30s,-1C/cyc->72C_30s)x10->(94C_30s->55C_30s->72C_30s)x35->72C_4min->10C
polymerase Toyobo rTaq DNA polymerase
Genebank No. AB499456
annotation
similar marker
product size in J 200
product size in Kaizuka-Wase
product size in Iki-White
product size in Tender Pole

Line allele-1 allele-2
C1s-11s-25s-7 229 229
Cho1s-1s-2s-2s-8s 223 223
D1s-15s-10s-8 225 225
F1s-7s-17s-3s-1 223 223
J1s-14s-23s-9 217 217
K1s-5s-2s-2s-4s-5 217 217
Chiang_mai - -
Kaizuka_Wase

Population Linkage Group Position
DJF2 Chr2a 176.4
FA 2a 92.3
SaT03 2a 174.2

DB Program Definition E-Value

EST Name Species Strain