+Marker Data: AFAT02H05

Crop bunching_onion
Population DJF2
Linkage Group Chr4a
Marker Type SSR
Map Position 58.6
Annotation
Source Name AB499445
Source Type genomic
Source Sequence
Developer NIVTS
Document Tsukazaki et al. (2007) Euphytica 157:83-94

motif (ac)12tga(ta)4
PCR product (bp) 299
fwd primer AFAT02H05-U
fwd primer seq. actcgtaccagtttctcctttttcc
rev primer AFAT02H05-L
rev primer seq. gtttcggatcaatacagggaatgc
fluor. primer AFAT02H05-F(PET)
dye PET
fluor. Primer seq. PET-actcgtaccagtttctcctttttcc
PCR condition 94C_2min->(94C_30s->65C_30s,-1C/cyc->72C_30s)x10->(94C_30s->55C_30s->72C_30s)x35->72C_4min->10C
polymerase Toyobo rTaq DNA polymerase
Genebank No. AB499445
annotation
similar marker
product size in J 290
product size in Kaizuka-Wase
product size in Iki-White
product size in Tender Pole

Line allele-1 allele-2
C1s-11s-25s-7 300 302
Cho1s-1s-2s-2s-8s 294 294
D1s-15s-10s-8 296 296
F1s-7s-17s-3s-1 302 302
J1s-14s-23s-9 290 302
K1s-5s-2s-2s-4s-5 292 292
Chiang_mai
Kaizuka_Wase

Population Linkage Group Position
DJF2 Chr4a 58.6
FA 4a 51.5
KiCF2 4a 95.0

DB Program Definition E-Value

EST Name Species Strain