Crop | bunching_onion |
---|---|
Population | DJF2 |
Linkage Group | Chr4b |
Marker Type | SSR |
Map Position | 0.0 |
Annotation | |
Source Name | AB499436 |
Source Type | genomic |
Source Sequence | |
Developer | NIVTS |
Document | Tsukazaki et al. (2008) Theor Appl Genet 117:1213-1223 |
motif | (ac)10a(ta)10t(ac)8a(ta)3cacaa(ac)9a(ta)9cg(ta)5agag(tg)4 |
---|---|
PCR product (bp) | 293 |
fwd primer | AFAA05B02-U |
fwd primer seq. | agtaaagttatccatacaatgccca |
rev primer | AFAA05B02-L |
rev primer seq. | gtttggaccagttatccatacgtacaca |
fluor. primer | |
dye | |
fluor. Primer seq. | |
PCR condition | 94C_2min->(94C_30s->65C_30s,-1C/cyc->72C_30s)x10->(94C_30s->55C_30s->72C_30s)x35->72C_4min->10C |
polymerase | Toyobo rTaq DNA polymerase |
Genebank No. | AB499436 |
annotation | |
similar marker | |
product size in J | 300 |
product size in Kaizuka-Wase | 300 |
product size in Iki-White | |
product size in Tender Pole |
Line | allele-1 | allele-2 |
---|---|---|
C1s-11s-25s-7 | ||
Cho1s-1s-2s-2s-8s | 288 | 288 |
D1s-15s-10s-8 | 286 | 286 |
F1s-7s-17s-3s-1 | ||
J1s-14s-23s-9 | 294 | 294 |
K1s-5s-2s-2s-4s-5 | 302 | 302 |
Chiang_mai | ||
Kaizuka_Wase |
Population | Linkage Group | Position |
---|---|---|
DJF2 | Chr4b | 0.0 |
FA | 7b | 57.2 |
KiCF2 | 4b | 73.9 |
SaT03 | 4b | 9.7 |
DB | Program | Definition | E-Value |
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EST Name | Species | Strain |
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