+Marker Data: AFAA05B02

Crop bunching_onion
Population DJF2
Linkage Group Chr4b
Marker Type SSR
Map Position 0.0
Annotation
Source Name AB499436
Source Type genomic
Source Sequence
Developer NIVTS
Document Tsukazaki et al. (2008) Theor Appl Genet 117:1213-1223

motif (ac)10a(ta)10t(ac)8a(ta)3cacaa(ac)9a(ta)9cg(ta)5agag(tg)4
PCR product (bp) 293
fwd primer AFAA05B02-U
fwd primer seq. agtaaagttatccatacaatgccca
rev primer AFAA05B02-L
rev primer seq. gtttggaccagttatccatacgtacaca
fluor. primer
dye
fluor. Primer seq.
PCR condition 94C_2min->(94C_30s->65C_30s,-1C/cyc->72C_30s)x10->(94C_30s->55C_30s->72C_30s)x35->72C_4min->10C
polymerase Toyobo rTaq DNA polymerase
Genebank No. AB499436
annotation
similar marker
product size in J 300
product size in Kaizuka-Wase 300
product size in Iki-White
product size in Tender Pole

Line allele-1 allele-2
C1s-11s-25s-7
Cho1s-1s-2s-2s-8s 288 288
D1s-15s-10s-8 286 286
F1s-7s-17s-3s-1
J1s-14s-23s-9 294 294
K1s-5s-2s-2s-4s-5 302 302
Chiang_mai
Kaizuka_Wase

Population Linkage Group Position
DJF2 Chr4b 0.0
FA 7b 57.2
KiCF2 4b 73.9
SaT03 4b 9.7

DB Program Definition E-Value

EST Name Species Strain