+Marker Data: AFAA02D08

Crop bunching_onion
Population DJF2
Linkage Group Chr1a
Marker Type SSR
Map Position 90.2
Annotation
Source Name AB499432
Source Type genomic
Source Sequence
Developer NIVTS
Document Tsukazaki et al. (2007) Euphytica 157:83-94

motif (tg)10(ta)6tgtatgtatgcatgta(tg)7
PCR product (bp) 172
fwd primer AFAA02D08-U
fwd primer seq. atatggccaagttccattttgagc
rev primer AFAA02D08-L
rev primer seq. gtttctttttacagcaacggagcagca
fluor. primer
dye
fluor. Primer seq.
PCR condition 94C_2min->(94C_30s->65C_30s,-1C/cyc->72C_30s)x10->(94C_30s->55C_30s->72C_30s)x35->72C_4min->10C
polymerase Toyobo rTaq DNA polymerase
Genebank No. AB499432
annotation
similar marker
product size in J 180
product size in Kaizuka-Wase 180
product size in Iki-White 140
product size in Tender Pole 120

Line allele-1 allele-2
C1s-11s-25s-7 171 171
Cho1s-1s-2s-2s-8s 169 169
D1s-15s-10s-8 179 179
F1s-7s-17s-3s-1 171 171
J1s-14s-23s-9 171 171
K1s-5s-2s-2s-4s-5 181 181
Chiang_mai 139 139
Kaizuka_Wase

Population Linkage Group Position
DJF2 Chr1a 90.2
KiCF2 1a 86.7
SaT03 1a 70.8

DB Program Definition E-Value

EST Name Species Strain