+Marker Data: AFAA01D09

Crop bunching_onion
Population DJF2
Linkage Group Chr2a
Marker Type SSR
Map Position 235.2
Annotation
Source Name AB499431
Source Type genomic
Source Sequence
Developer NIVTS
Document Tsukazaki et al. (2007) Euphytica 157:83-94

motif (tc)6(ac)6
PCR product (bp) 130
fwd primer AFAA01D09-U
fwd primer seq. accataatggagcatccaaaaact
rev primer AFAA01D09-L
rev primer seq. gtttaaagcaacttgcatcgtacgtcat
fluor. primer AFAA01D09-F(NED)
dye NED
fluor. Primer seq. NED-accataatggagcatccaaaaact
PCR condition 94C_2min->(94C_30s->65C_30s,-1C/cyc->72C_30s)x10->(94C_30s->55C_30s->72C_30s)x35->72C_4min->10C
polymerase Toyobo rTaq DNA polymerase
Genebank No. AB499431
annotation
similar marker
product size in J 140
product size in Kaizuka-Wase
product size in Iki-White
product size in Tender Pole

Line allele-1 allele-2
C1s-11s-25s-7 120 120
Cho1s-1s-2s-2s-8s 120 120
D1s-15s-10s-8 120 120
F1s-7s-17s-3s-1 120 130
J1s-14s-23s-9 128 128
K1s-5s-2s-2s-4s-5 120 120
Chiang_mai
Kaizuka_Wase

Population Linkage Group Position
DJF2 Chr2a 235.2

DB Program Definition E-Value

EST Name Species Strain