+Marker Data: AFA10B06

Crop bunching_onion
Population DJF2
Linkage Group Chr1c
Marker Type SSR
Map Position 0.0
Annotation
Source Name AB499402
Source Type genomic
Source Sequence
Developer NIVTS
Document Tsukazaki et al. (2007) Euphytica 157:83-94

motif (ac)15(tc)6
PCR product (bp) 298
fwd primer AFA10B06-U
fwd primer seq. acgcaaactggactaactgtacaaa
rev primer AFA10B06-L
rev primer seq. gtttggcagaatagcccaagtgttttca
fluor. primer AFA10B06-F(PET)
dye PET
fluor. Primer seq. PET-acgcaaactggactaactgtacaaa
PCR condition 94C_2min->(94C_30s->65C_30s,-1C/cyc->72C_30s)x10->(94C_30s->55C_30s->72C_30s)x35->72C_4min->10C
polymerase Toyobo rTaq DNA polymerase
Genebank No. AB499402
annotation
similar marker
product size in J 300
product size in Kaizuka-Wase 300
product size in Iki-White
product size in Tender Pole

Line allele-1 allele-2
C1s-11s-25s-7 302 302
Cho1s-1s-2s-2s-8s 302 302
D1s-15s-10s-8 294 294
F1s-7s-17s-3s-1 294 294
J1s-14s-23s-9 296 302
K1s-5s-2s-2s-4s-5 281 281
Chiang_mai 309 309
Kaizuka_Wase

Population Linkage Group Position
DJF2 Chr1c 0.0
FA 1a 33.9
KiCF2 1a 281.5

DB Program Definition E-Value

EST Name Species Strain