+Marker Data: AFA07C08

Crop bunching_onion
Population DJF2
Linkage Group Chr2a
Marker Type SSR
Map Position 125.6
Annotation
Source Name AB499383
Source Type genomic
Source Sequence
Developer NIVTS
Document Tsukazaki et al. (2008) Theor Appl Genet 117:1213-1223

motif (tg)4(ta)8tctc(tg)9
PCR product (bp) 245
fwd primer AFA07C08-U
fwd primer seq. agtgctaaagccaggatcattgag
rev primer AFA07C08-L
rev primer seq. gtttgctttcaaaagtaaaggggacca
fluor. primer AFA07C08-F(FAM)
dye FAM
fluor. Primer seq. FAM-agtgctaaagccaggatcattgag
PCR condition 94C_2min->(94C_30s->65C_30s,-1C/cyc->72C_30s)x10->(94C_30s->55C_30s->72C_30s)x35->72C_4min->10C
polymerase Toyobo rTaq DNA polymerase
Genebank No. AB499383
annotation
similar marker
product size in J 250
product size in Kaizuka-Wase 240
product size in Iki-White 220
product size in Tender Pole

Line allele-1 allele-2
C1s-11s-25s-7
Cho1s-1s-2s-2s-8s 242 242
D1s-15s-10s-8 230 230
F1s-7s-17s-3s-1
J1s-14s-23s-9 244 244
K1s-5s-2s-2s-4s-5
Chiang_mai 222 222
Kaizuka_Wase

Population Linkage Group Position
DJF2 Chr2a 125.6
KiCF2 2a 109.2
SaT03 2a 120.3

DB Program Definition E-Value

EST Name Species Strain