+Marker Data: AFA07A08

Crop bunching_onion
Population DJF2
Linkage Group ChrX
Marker Type SSR
Map Position 42.4
Annotation
Source Name AB499381
Source Type genomic
Source Sequence
Developer NIVTS
Document Tsukazaki et al. (2007) Euphytica 157:83-94

motif (tg)8tt(tg)5
PCR product (bp) 215
fwd primer AFA07A08-U
fwd primer seq. actggaaggcggtttaaggctatt
rev primer AFA07A08-L
rev primer seq. gtttgcatccatatccatatcccacgat
fluor. primer AFA07A08-F(PET)
dye PET
fluor. Primer seq. PET-actggaaggcggtttaaggctatt
PCR condition 94C_2min->(94C_30s->65C_30s,-1C/cyc->72C_30s)x10->(94C_30s->55C_30s->72C_30s)x35->72C_4min->10C
polymerase Toyobo rTaq DNA polymerase
Genebank No. AB499381
annotation
similar marker
product size in J 220
product size in Kaizuka-Wase 210
product size in Iki-White
product size in Tender Pole 220

Line allele-1 allele-2
C1s-11s-25s-7 223 223
Cho1s-1s-2s-2s-8s 241 241
D1s-15s-10s-8 225 253
F1s-7s-17s-3s-1 223 249
J1s-14s-23s-9 223 223
K1s-5s-2s-2s-4s-5 251 251
Chiang_mai 233 233
Kaizuka_Wase

Population Linkage Group Position
DJF2 ChrX 42.4
FA 5b 43.6
KiCF2 5b 158.9
SaT03 5b 96.1

DB Program Definition E-Value

EST Name Species Strain