+Marker Data: AFA01E09

Crop bunching_onion
Population DJF2
Linkage Group Chr2a
Marker Type SSR
Map Position 151.3
Annotation
Source Name AB499346
Source Type genomic
Source Sequence
Developer NIVTS
Document Tsukazaki et al. (2008) Theor Appl Genet 117:1213-1223

motif (ta)3tctatatgt(ac)13
PCR product (bp) 179
fwd primer AFA01E09-U
fwd primer seq. accaacctacttgagggattgcta
rev primer AFA01E09-L
rev primer seq. gtttctgtgtatgcaggcaatttgg
fluor. primer
dye FAM
fluor. Primer seq. FAM-accaacctacttgagggattgcta
PCR condition 94C_2min->(94C_30s->65C_30s,-1C/cyc->72C_30s)x10->(94C_30s->55C_30s->72C_30s)x35->72C_4min->10C
polymerase Toyobo rTaq DNA polymerase
Genebank No. AB499346
annotation
similar marker
product size in J 180
product size in Kaizuka-Wase 170
product size in Iki-White
product size in Tender Pole

Line allele-1 allele-2
C1s-11s-25s-7
Cho1s-1s-2s-2s-8s 179 179
D1s-15s-10s-8 160 160
F1s-7s-17s-3s-1 180 180
J1s-14s-23s-9 180 180
K1s-5s-2s-2s-4s-5 177 177
Chiang_mai 180 180
Kaizuka_Wase

Population Linkage Group Position
DJF2 Chr2a 151.3
KiCF2 2a 130.0
SaT03 2a 142.9

DB Program Definition E-Value

EST Name Species Strain