+Marker Data: ACE088

Crop bunching_onion
Population DJF2
Linkage Group Chr6a
Marker Type SSR
Map Position 103.7
Annotation
Source Name TC2278
Source Type onion_EST
Source Sequence
Developer NIVTS
Document Tsukazaki et al. (2008) Theor Appl Genet 117:1213-1223

motif (ta)33
PCR product (bp) 234
fwd primer ACE088-F
fwd primer seq. atttatagccatcattcttttt
rev primer ACE088-R
rev primer seq. gggatatctagtattgcatgtctgc
fluor. primer
dye
fluor. Primer seq.
PCR condition 94C_2min->(94C_30s->55C_30s,-1C/cyc->72C_30s)x10->(94C_30s->45C_30s->72C_30s)x35->72C_4min->10C
polymerase Toyobo rTaq DNA polymerase
Genebank No.
annotation weakly similar to similar to RANBP9 isoform 1 {Oryza sativa (japonica cultivar-group)}, partial (29%)
similar marker
product size in J
product size in Kaizuka-Wase
product size in Iki-White
product size in Tender Pole

Line allele-1 allele-2
C1s-11s-25s-7
Cho1s-1s-2s-2s-8s
D1s-15s-10s-8 220 220
F1s-7s-17s-3s-1
J1s-14s-23s-9 250 250
K1s-5s-2s-2s-4s-5
Chiang_mai
Kaizuka_Wase

Population Linkage Group Position
DJF2 Chr6a 103.7

DB Program Definition E-Value

EST Name Species Strain