+Marker Data: ACE039

Crop bunching_onion
Population DJF2
Linkage Group Chr4b
Marker Type SSR
Map Position 61.6
Annotation
Source Name CF442638
Source Type onion_EST
Source Sequence
Developer NIVTS
Document Tsukazaki et al. (2008) Theor Appl Genet 117:1213-1223

motif (cg)4c(ac)4(tc)3t(ac)4gtgca(tg)3
PCR product (bp) 250
fwd primer ACE039-F
fwd primer seq. atggtcgtccatttcttattgaagt
rev primer ACE039-R
rev primer seq. ttgatgtatgaggcagcattctactg
fluor. primer ACE039-F(PET)
dye PET
fluor. Primer seq. PET-atggtcgtccatttcttattgaagt
PCR condition 94C_2min->(94C_30s->65C_30s,-1C/cyc->72C_30s)x10->(94C_30s->55C_30s->72C_30s)x35->72C_4min->10C
polymerase Toyobo rTaq DNA polymerase
Genebank No. CF442638
annotation similar to GP|8778607|gb|AAF79615.1|AC027665_16|AC027665 F5M15.23 {Arabidopsis thaliana}, partial (7%)
similar marker ACM306
product size in J 260
product size in Kaizuka-Wase 300
product size in Iki-White 250
product size in Tender Pole

Line allele-1 allele-2
C1s-11s-25s-7 271 273
Cho1s-1s-2s-2s-8s 273 273
D1s-15s-10s-8 273 273
F1s-7s-17s-3s-1 273 273
J1s-14s-23s-9 275 275
K1s-5s-2s-2s-4s-5 273 273
Chiang_mai 254 254
Kaizuka_Wase

Population Linkage Group Position
DJF2 Chr4b 61.6
FA 7b 31.0
SaT03 4b 34.5

DB Program Definition E-Value

EST Name Species Strain