| Crop | eggplant |
|---|---|
| Population | LWAE2012 |
| Linkage Group | E_02 |
| Marker Type | SSR |
| Map Position | 1.991 |
| Annotation | |
| Source Name | EMB01L13 |
| Source Type | genomic |
| Source Sequence | CCAGACATTTATGTGTTGGTGGAGACAAAAATAGATGGTT CACTGGACACCTACACCCACAGCCATGTCGTGTCGACACG GGTGGCACCAAAAGTGAAGAGTCCGAGCAACATAGGTTCC TACTCCCTTTCGTCCATTCGCACAAGTCTCCCAATGTACC TGAAGTTCTTGAGACATCAAAAGACTTGAAACCCGATGGT GTCTTCTTCCATCAGTTCAAAGGAGAAAATGGGTATAAGG AGAGAGAGGAGAAGACGAGGATCAAAGGAGAAATGGGTAT CAGAGGAGGGAGGGAGAGAGAGAGAGGTGGGGGGGGGGGT TGATGTCCGGTGATCAAAAACCTGATGGTGTCTTCTTCTA TCAGATCAAAGGAGAAAATGGGTATCAGAAGAGATAGGAG AGAGGAGAAGAC |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (AG)6 |
|---|---|
| PCR product (bp) | 170 |
| fwd primer | |
| fwd primer seq. | tcaaaagacttgaaacccgatggt |
| rev primer | EMB01L13pt |
| rev primer seq. | gtttatcaggtttttgatcaccggaca |
| fluor. primer | |
| dye | FAM |
| fluor. Primer seq. | FAM-TCAAAAGACTTGAAACCCGATGGT |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_02 | 0.3 |
| EW2009 | LG08 | 3.4 |
| LWA2010 | LWA_02 | 1.333 |
| LWAE2012 | E_02 | 1.991 |
| NAF2 | NA02.1 | 0.0 |
| DB | Program | Definition | E-Value |
|---|
| EST Name | Species | Strain |
|---|
